RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 EPHA4P54764 986 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 FOXK2Q01167 660 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 ARSJQ5FYB0 599 aaPredicted RBP6.54□□□□□ -1.36
NUP88-209ENST00000574855 SLC9A9Q8IVB4 645 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 ZNF295-AS1Q8N0V1 137 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 VRTNQ9H8Y1 702 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 ZDHHC3Q9NYG2 299 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 USP3Q9Y6I4 520 aa6.54□□□□□ -1.36
NUP88-209ENST00000574855 THBS1P07996 1170 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 MX2P20592 715 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 SEC13P55735 322 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 TEAD4Q15561 434 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 KANK4Q5T7N3 995 aaPredicted RBP6.53□□□□□ -1.36
NUP88-209ENST00000574855 FIGNL1Q6PIW4 674 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 NLRP8Q86W28 1048 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 L3MBTL2Q969R5 705 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 CHMP3Q9Y3E7 222 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 PARP3Q9Y6F1 533 aa6.53□□□□□ -1.36
NUP88-209ENST00000574855 ATP4AP20648 1035 aa6.52□□□□□ -1.37
NUP88-209ENST00000574855 NOS2P35228 1153 aa6.52□□□□□ -1.37
NUP88-209ENST00000574855 TBCELQ5QJ74 424 aa6.52□□□□□ -1.37
NUP88-209ENST00000574855 SVOPQ8N4V2 548 aa6.52□□□□□ -1.37
NUP88-209ENST00000574855 ATXN7L1Q9ULK2 861 aaPredicted RBP6.52□□□□□ -1.37
NUP88-209ENST00000574855 ZNF232Q9UNY5 417 aa6.52□□□□□ -1.37
NUP88-209ENST00000574855 A0A1W2PNR3 127 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 SERTM1A2A2V5 107 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 FAM196BA6NMK8 535 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 SFI1A8K8P3 1242 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 DKK1O94907 266 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 PTK7Q13308 1070 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 UBAP2LQ14157 1087 aaKnown RBP6.51□□□□□ -1.37
NUP88-209ENST00000574855 CFAP70Q5T0N1 1121 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 ZNF385CQ66K41 422 aaPredicted RBP6.51□□□□□ -1.37
NUP88-209ENST00000574855 BICDL1Q6ZP65 573 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 TSEN2Q8NCE0 465 aaKnown RBP6.51□□□□□ -1.37
NUP88-209ENST00000574855 PCDHGC4Q9Y5F7 938 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 GJA3Q9Y6H8 435 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 IGF1RP08069 1367 aa6.51□□□□□ -1.37
NUP88-209ENST00000574855 MAP3K10Q02779 954 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 DPYDQ12882 1025 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 CRTC2Q53ET0 693 aaPredicted RBP6.5□□□□□ -1.37
NUP88-209ENST00000574855 WHAMMQ8TF30 809 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 ZDHHC1Q8WTX9 485 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 ZIC5Q96T25 663 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 HINFPQ9BQA5 517 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 ZCCHC2Q9C0B9 1178 aaKnown RBP6.5□□□□□ -1.37
NUP88-209ENST00000574855 TSPAN10Q9H1Z9 355 aaPredicted RBP6.5□□□□□ -1.37
NUP88-209ENST00000574855 ENAMQ9NRM1 1142 aa6.5□□□□□ -1.37
NUP88-209ENST00000574855 ATAD2Q6PL18 1390 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L15C9J2P7 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L10C9JJH3 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L13C9JLJ4 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L12C9JPN9 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L11C9JVI0 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L21D6R901 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L18D6R9N7 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L22D6RA61 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L17D6RBQ6 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L19D6RCP7 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L20D6RJB6 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 ATXN7O15265 892 aaPredicted RBP6.49□□□□□ -1.37
NUP88-209ENST00000574855 BNIP3LO60238 219 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 RFX1P22670 979 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 TXLNAP40222 546 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 MAP2K3P46734 347 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 PSMA6P60900 246 aaKnown RBP6.49□□□□□ -1.37
NUP88-209ENST00000574855 USP17L24Q0WX57 530 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 ANKMY2Q8IV38 441 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 GAS2L2Q8NHY3 880 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 ABHD17AQ96GS6 310 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 NEUROD4Q9HD90 331 aa6.49□□□□□ -1.37
NUP88-209ENST00000574855 PPP1R12BO60237 982 aaPredicted RBP6.48□□□□□ -1.37
NUP88-209ENST00000574855 CELA2BP08218 269 aaPredicted RBP6.48□□□□□ -1.37
NUP88-209ENST00000574855 FGFR3P22607 806 aa6.48□□□□□ -1.37
NUP88-209ENST00000574855 LYPD4Q6UWN0 246 aa6.48□□□□□ -1.37
NUP88-209ENST00000574855 NDFIP2Q9NV92 336 aa6.48□□□□□ -1.37
NUP88-209ENST00000574855 ADAMTS8Q9UP79 889 aa6.48□□□□□ -1.37
NUP88-209ENST00000574855 GPC6Q9Y625 555 aaPredicted RBP6.48□□□□□ -1.37
NUP88-209ENST00000574855 EML1O00423 815 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 ARHGEF15O94989 841 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 BCRP11274 1271 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 CDCA8Q53HL2 280 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 C1orf53Q5VUE5 145 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 SCG3Q8WXD2 468 aaKnown RBP6.47□□□□□ -1.37
NUP88-209ENST00000574855 LRRC4BQ9NT99 713 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 HCN4Q9Y3Q4 1203 aa6.47□□□□□ -1.37
NUP88-209ENST00000574855 KHNYNO15037 678 aaKnown RBP6.46□□□□□ -1.38
NUP88-209ENST00000574855 C21orf2O43822 256 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 BMP4P12644 408 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 HIRAP54198 1017 aaPredicted RBP6.46□□□□□ -1.38
NUP88-209ENST00000574855 TNP2Q05952 138 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 SH3PXD2AQ5TCZ1 1133 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 STAG2Q8N3U4 1231 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 FAM200AQ8TCP9 573 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 CHMP7Q8WUX9 453 aaPredicted RBP6.46□□□□□ -1.38
NUP88-209ENST00000574855 ACDQ96AP0 544 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 KLRG1Q96E93 195 aa6.46□□□□□ -1.38
NUP88-209ENST00000574855 OXCT2Q9BYC2 517 aaPredicted RBP6.46□□□□□ -1.38
NUP88-209ENST00000574855 MAPTP10636 758 aaKnown RBP6.45□□□□□ -1.38
NUP88-209ENST00000574855 MARSP56192 900 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms