RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	GOLGA6L22	H0YM25	854 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	APBB1	O00213	710 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	TRAK2	O60296	914 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	GIGYF1	O75420	1035 aa	Predicted RBP	7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	CPD	O75976	1380 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	DDX58	O95786	925 aa	Known RBP	7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	ATF3	P18847	181 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	TTC41P	Q6P2S7	1318 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	KSR2	Q6VAB6	950 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	NPHP3	Q7Z494	1330 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	PPP1R42	Q7Z4L9	355 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	ERC1	Q8IUD2	1116 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	SPRYD3	Q8NCJ5	442 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	NECTIN2	Q92692	538 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	TNPO1	Q92973	898 aa	Known RBP	7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	TUBGCP6	Q96RT7	1819 aa		7.65	□□□□□ -1.18
CLN3-223	ENST00000566472	TMEM94	Q12767	1356 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	UTY	O14607	1347 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	ZBTB7C	A1YPR0	619 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	PI4KAP2	A4QPH2	592 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	CD2BP2	O95400	341 aa	Known RBP	7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	TAT	P17735	454 aa	Predicted RBP	7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	EIF2S2	P20042	333 aa	Known RBP	7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	CHML	P26374	656 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	MPRIP	Q6WCQ1	1025 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	CADPS2	Q86UW7	1296 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	PI4KAP1	Q8N8J0	262 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	RHPN1	Q8TCX5	695 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	RAPGEF4	Q8WZA2	1011 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	RBM33	Q96EV2	1170 aa	Known RBP	7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	DDX21	Q9NR30	783 aa	Known RBP eCLIP	7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	SPG7	Q9UQ90	795 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	RGPD2	P0DJD1	1756 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	CRYBG1	Q9Y4K1	1723 aa		7.64	□□□□□ -1.19
CLN3-223	ENST00000566472	KDM6A	O15550	1401 aa	Predicted RBP	7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	COL15A1	P39059	1388 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	GOLGA6L3	A6NEY3	463 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	SRGAP3	O43295	1099 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	KCNQ3	O43525	872 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	SURF6	O75683	361 aa	Known RBP	7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	CYP2E1	P05181	493 aa	Predicted RBP	7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	LINS1	Q8NG48	757 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	RBM42	Q9BTD8	480 aa	Known RBP	7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	COL18A1	P39060	1754 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	PKD1L3	Q7Z443	1732 aa		7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	PARP4	Q9UKK3	1724 aa	Known RBP	7.63	□□□□□ -1.19
CLN3-223	ENST00000566472	GLRX3	O76003	335 aa	Known RBP	7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	NBPF7	P0C2Y1	421 aa	Predicted RBP	7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	PHKG2	P15735	406 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	XPC	Q01831	940 aa	Predicted RBP	7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	LMOD2	Q6P5Q4	547 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	IFNL2	Q8IZJ0	200 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	CNTROB	Q8N137	903 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	PI4K2B	Q8TCG2	481 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	GPATCH3	Q96I76	525 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	SLC52A2	Q9HAB3	445 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	AXIN2	Q9Y2T1	843 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	MEGF6	O75095	1541 aa		7.62	□□□□□ -1.19
CLN3-223	ENST00000566472	ERBB4	Q15303	1308 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	SPATA31A3	Q5VYP0	1347 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	TRIM6-TRIM34	B2RNG4	842 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	MRE11	P49959	708 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	CUL4A	Q13619	759 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	ZNF790	Q6PG37	636 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	LARP1	Q6PKG0	1096 aa	Known RBP	7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	CLASRP	Q8N2M8	674 aa	Known RBP	7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	INTS4	Q96HW7	963 aa	Known RBP	7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	MAP3K2	Q9Y2U5	619 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	SCN11A	Q9UI33	1791 aa		7.61	□□□□□ -1.19
CLN3-223	ENST00000566472	RAD50	Q92878	1312 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	GRM8	O00222	908 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	SGSM2	O43147	1006 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	BAG4	O95429	457 aa	Known RBP	7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	SSFA2	P28290	1259 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	HSPA4	P34932	840 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	NEXN	Q0ZGT2	675 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	PDIA6	Q15084	440 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	KLHL40	Q2TBA0	621 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	RUFY2	Q8WXA3	655 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	RILPL2	Q969X0	211 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	DCAF5	Q96JK2	942 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	IL1RAPL2	Q9NP60	686 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	ANO2	Q9NQ90	1003 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	NLRP2	Q9NX02	1062 aa		7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	C9orf78	Q9NZ63	289 aa	Predicted RBP	7.6	□□□□□ -1.19
CLN3-223	ENST00000566472	HIP1	O00291	1037 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	SNRPA1	P09661	255 aa	Known RBP	7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	OS9	Q13438	667 aa	Predicted RBP	7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	PROSER3	Q2NL68	480 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	NUTM1	Q86Y26	1132 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	FAM43A	Q8N2R8	423 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	ECHDC1	Q9NTX5	307 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	BRPF3	Q9ULD4	1205 aa		7.59	□□□□□ -1.19
CLN3-223	ENST00000566472	LAMB4	A4D0S4	1761 aa		7.59	□□□□□ -1.2
CLN3-223	ENST00000566472	STRCP1	A6NGW2	1772 aa		7.59	□□□□□ -1.2
CLN3-223	ENST00000566472	GLI3	P10071	1580 aa		7.59	□□□□□ -1.2
CLN3-223	ENST00000566472	RFX7	Q2KHR2	1363 aa		7.59	□□□□□ -1.2
CLN3-223	ENST00000566472	C5	P01031	1676 aa		7.58	□□□□□ -1.2
CLN3-223	ENST00000566472	PLEKHG5	O94827	1062 aa		7.58	□□□□□ -1.2
CLN3-223	ENST00000566472	ANXA1	P04083	346 aa		7.58	□□□□□ -1.2

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