RNA–Protein interactions for RNA: ENST00000565966.5

HERPUD1-210, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 5

Gene HERPUD1, Length 798 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-210ENST00000565966 SYT17Q9BSW7 474 aa18.2■□□□□ 0.5
HERPUD1-210ENST00000565966 LMOD3Q0VAK6 560 aa18.19■□□□□ 0.5
HERPUD1-210ENST00000565966 RRP7AQ9Y3A4 280 aaKnown RBP18.19■□□□□ 0.5
HERPUD1-210ENST00000565966 KDM3BQ7LBC6 1761 aa18.19■□□□□ 0.5
HERPUD1-210ENST00000565966 THUMPD2Q9BTF0 503 aaKnown RBP18.18■□□□□ 0.5
HERPUD1-210ENST00000565966 NEUROD2Q15784 382 aa18.17■□□□□ 0.5
HERPUD1-210ENST00000565966 NLGN1Q8N2Q7 840 aa18.17■□□□□ 0.5
HERPUD1-210ENST00000565966 MIS18AQ9NYP9 233 aa18.17■□□□□ 0.5
HERPUD1-210ENST00000565966 ZBTB1Q9Y2K1 713 aa18.17■□□□□ 0.5
HERPUD1-210ENST00000565966 SOS1Q07889 1333 aaPredicted RBP18.17■□□□□ 0.5
HERPUD1-210ENST00000565966 SNRPA1P09661 255 aaKnown RBP18.16■□□□□ 0.5
HERPUD1-210ENST00000565966 APAF1O14727 1248 aa18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 GYS1P13807 737 aa18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 CANXP27824 592 aaKnown RBP18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 DIEXFQ68CQ4 756 aaKnown RBP18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 KLHL34Q8N239 644 aa18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 USP16Q9Y5T5 823 aa18.15■□□□□ 0.5
HERPUD1-210ENST00000565966 DCAF8L1A6NGE4 600 aa18.14■□□□□ 0.49
HERPUD1-210ENST00000565966 TRIM35Q9UPQ4 493 aa18.14■□□□□ 0.49
HERPUD1-210ENST00000565966 USP42Q9H9J4 1324 aaKnown RBP18.14■□□□□ 0.49
HERPUD1-210ENST00000565966 ZPR1O75312 459 aa18.13■□□□□ 0.49
HERPUD1-210ENST00000565966 EIF5P55010 431 aaKnown RBP18.13■□□□□ 0.49
HERPUD1-210ENST00000565966 BABAM1Q9NWV8 329 aa18.13■□□□□ 0.49
HERPUD1-210ENST00000565966 SRP68Q9UHB9 627 aaKnown RBP18.13■□□□□ 0.49
HERPUD1-210ENST00000565966 COL15A1P39059 1388 aa18.13■□□□□ 0.49
HERPUD1-210ENST00000565966 A0A087WZG4 1122 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 PRAMEF22A3QJZ6 481 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 A1BGP04217 495 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 MMP10P09238 476 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 IL6STP40189 918 aaPredicted RBP18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 NARFQ9UHQ1 456 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 LAMB4A4D0S4 1761 aa18.12■□□□□ 0.49
HERPUD1-210ENST00000565966 EIF4A1P60842 406 aaKnown RBP18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 USPL1Q5W0Q7 1092 aa18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 NPM2Q86SE8 214 aaKnown RBP18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 FAM9BQ8IZU0 186 aa18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 TSPYL4Q9UJ04 414 aa18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 CD2APQ9Y5K6 639 aa18.11■□□□□ 0.49
HERPUD1-210ENST00000565966 CCER2I3L3R5 266 aa18.1■□□□□ 0.49
HERPUD1-210ENST00000565966 GIGYF1O75420 1035 aaPredicted RBP18.09■□□□□ 0.49
HERPUD1-210ENST00000565966 FKBP8Q14318 412 aa18.09■□□□□ 0.49
HERPUD1-210ENST00000565966 KIF13BQ9NQT8 1826 aa18.09■□□□□ 0.49
HERPUD1-210ENST00000565966 ZNF330Q9Y3S2 320 aaPredicted RBP18.08■□□□□ 0.48
HERPUD1-210ENST00000565966 PARP3Q9Y6F1 533 aa18.08■□□□□ 0.48
HERPUD1-210ENST00000565966 SENP3-EIF4A1A0A087X0R7 540 aa18.07■□□□□ 0.48
HERPUD1-210ENST00000565966 NLGN2Q8NFZ4 835 aa18.07■□□□□ 0.48
HERPUD1-210ENST00000565966 CHL1O00533 1208 aa18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 TM4SF1P30408 202 aa18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 MIER1Q8N108 512 aa18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 TBC1D2BQ9UPU7 963 aa18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 LAS1LQ9Y4W2 734 aaKnown RBP18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 AFDNP55196 1824 aaKnown RBP18.06■□□□□ 0.48
HERPUD1-210ENST00000565966 PIP4K2AP48426 406 aaPredicted RBP18.05■□□□□ 0.48
HERPUD1-210ENST00000565966 BCL2L12Q9HB09 334 aa18.05■□□□□ 0.48
HERPUD1-210ENST00000565966 CHD4Q14839 1912 aa18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 NBPF26B4DH59 902 aa18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 NBPF10Q6P3W6 841 aaKnown RBP18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 NBPF15Q8N660 670 aa18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 CFAP44Q96MT7 982 aa18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 BCORQ6W2J9 1755 aa18.04■□□□□ 0.48
HERPUD1-210ENST00000565966 SCN7AQ01118 1682 aa18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 CALD1Q05682 793 aaKnown RBP18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 DDR1Q08345 913 aa18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 NFIXQ14938 502 aa18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 CCDC27Q2M243 656 aa18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 NCBP3Q53F19 620 aaKnown RBP18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 DZIP3Q86Y13 1208 aaKnown RBP18.03■□□□□ 0.48
HERPUD1-210ENST00000565966 N4BP2Q86UW6 1770 aaPredicted RBP18.02■□□□□ 0.48
HERPUD1-210ENST00000565966 POLRMTO00411 1230 aaKnown RBP18.02■□□□□ 0.48
HERPUD1-210ENST00000565966 GPR162Q16538 588 aa18.02■□□□□ 0.48
HERPUD1-210ENST00000565966 CAMTA2O94983 1202 aa18.01■□□□□ 0.47
HERPUD1-210ENST00000565966 ZNF853P0CG23 659 aa18.01■□□□□ 0.47
HERPUD1-210ENST00000565966 TGFB2P61812 414 aa18.01■□□□□ 0.47
HERPUD1-210ENST00000565966 WWC1Q8IX03 1113 aa18.01■□□□□ 0.47
HERPUD1-210ENST00000565966 NRXN2Q9P2S2 1712 aa18.01■□□□□ 0.47
HERPUD1-210ENST00000565966 ERBB4Q15303 1308 aa18■□□□□ 0.47
HERPUD1-210ENST00000565966 NUP98P52948 1817 aa18■□□□□ 0.47
HERPUD1-210ENST00000565966 C10orf71Q711Q0 1435 aa18■□□□□ 0.47
HERPUD1-210ENST00000565966 GNAI1P63096 354 aa18■□□□□ 0.47
HERPUD1-210ENST00000565966 IFT57Q9NWB7 429 aa18■□□□□ 0.47
HERPUD1-210ENST00000565966 KIAA1551Q9HCM1 1747 aa17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 EIF2S2P20042 333 aaKnown RBP17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 TBC1D9BQ66K14 1250 aa17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 CLEC4GQ6UXB4 293 aa17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 BICDL1Q6ZP65 573 aa17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 PELP1Q8IZL8 1130 aaKnown RBP17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 MBIPQ9NS73 344 aa17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 SALL2Q9Y467 1007 aaPredicted RBP17.99■□□□□ 0.47
HERPUD1-210ENST00000565966 UTRNP46939 3433 aa17.98■□□□□ 0.47
HERPUD1-210ENST00000565966 RGL2O15211 777 aa17.98■□□□□ 0.47
HERPUD1-210ENST00000565966 SERPINB2P05120 415 aa17.98■□□□□ 0.47
HERPUD1-210ENST00000565966 MYL6BP14649 208 aa17.98■□□□□ 0.47
HERPUD1-210ENST00000565966 ZNF652Q9Y2D9 606 aa17.98■□□□□ 0.47
HERPUD1-210ENST00000565966 BRCA1P38398 1863 aaKnown RBP17.97■□□□□ 0.47
HERPUD1-210ENST00000565966 GOLGB1Q14789 3259 aaKnown RBP17.97■□□□□ 0.47
HERPUD1-210ENST00000565966 KRT24Q2M2I5 525 aa17.97■□□□□ 0.47
HERPUD1-210ENST00000565966 NGEFQ8N5V2 710 aa17.97■□□□□ 0.47
HERPUD1-210ENST00000565966 SETDB2Q96T68 719 aa17.97■□□□□ 0.47
HERPUD1-210ENST00000565966 HOXB7P09629 217 aa17.96■□□□□ 0.47
HERPUD1-210ENST00000565966 PXDNLA1KZ92 1463 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms