RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LMOD3Q0VAK6 560 aa17.66■□□□□ 0.42
CLK3-216ENST00000564468 DCTN1Q14203 1278 aa17.66■□□□□ 0.42
CLK3-216ENST00000564468 MSL1Q68DK7 614 aa17.66■□□□□ 0.42
CLK3-216ENST00000564468 PNISRQ8TF01 805 aaKnown RBP17.66■□□□□ 0.42
CLK3-216ENST00000564468 ARHGEF1Q92888 912 aaKnown RBP17.66■□□□□ 0.42
CLK3-216ENST00000564468 ZNF496Q96IT1 587 aaPredicted RBP17.66■□□□□ 0.42
CLK3-216ENST00000564468 C4AP0C0L4 1744 aa17.66■□□□□ 0.42
CLK3-216ENST00000564468 SMIM5Q71RC9 77 aa17.65■□□□□ 0.42
CLK3-216ENST00000564468 NLGN1Q8N2Q7 840 aa17.65■□□□□ 0.42
CLK3-216ENST00000564468 RUNDC1Q96C34 613 aa17.65■□□□□ 0.42
CLK3-216ENST00000564468 RIPK4P57078 832 aa17.64■□□□□ 0.41
CLK3-216ENST00000564468 INTS5Q6P9B9 1019 aaKnown RBP17.64■□□□□ 0.41
CLK3-216ENST00000564468 NLGN2Q8NFZ4 835 aa17.64■□□□□ 0.41
CLK3-216ENST00000564468 TMPOP42166 694 aaKnown RBP17.63■□□□□ 0.41
CLK3-216ENST00000564468 ADAMTS8Q9UP79 889 aa17.63■□□□□ 0.41
CLK3-216ENST00000564468 KDM3BQ7LBC6 1761 aa17.61■□□□□ 0.41
CLK3-216ENST00000564468 ZPR1O75312 459 aa17.61■□□□□ 0.41
CLK3-216ENST00000564468 NPM2Q86SE8 214 aaKnown RBP17.61■□□□□ 0.41
CLK3-216ENST00000564468 SOS1Q07889 1333 aaPredicted RBP17.61■□□□□ 0.41
CLK3-216ENST00000564468 KCNQ3O43525 872 aa17.6■□□□□ 0.41
CLK3-216ENST00000564468 SNRPA1P09661 255 aaKnown RBP17.6■□□□□ 0.41
CLK3-216ENST00000564468 CCDC146Q8IYE0 955 aa17.6■□□□□ 0.41
CLK3-216ENST00000564468 ZBTB1Q9Y2K1 713 aa17.6■□□□□ 0.41
CLK3-216ENST00000564468 USP42Q9H9J4 1324 aaKnown RBP17.59■□□□□ 0.41
CLK3-216ENST00000564468 A0A087WZG4 1122 aa17.59■□□□□ 0.41
CLK3-216ENST00000564468 GYS1P13807 737 aa17.59■□□□□ 0.41
CLK3-216ENST00000564468 YBX3P16989 372 aaKnown RBP eCLIP17.59■□□□□ 0.412e-6■■■□□ 18.1
CLK3-216ENST00000564468 GPBP1L1Q9HC44 474 aaPredicted RBP17.59■□□□□ 0.41
CLK3-216ENST00000564468 CD2APQ9Y5K6 639 aa17.59■□□□□ 0.41
CLK3-216ENST00000564468 COL15A1P39059 1388 aa17.58■□□□□ 0.4
CLK3-216ENST00000564468 MMP10P09238 476 aa17.58■□□□□ 0.4
CLK3-216ENST00000564468 CANXP27824 592 aaKnown RBP17.58■□□□□ 0.4
CLK3-216ENST00000564468 BABAM1Q9NWV8 329 aa17.58■□□□□ 0.4
CLK3-216ENST00000564468 IL6STP40189 918 aaPredicted RBP17.57■□□□□ 0.4
CLK3-216ENST00000564468 NEUROD2Q15784 382 aa17.57■□□□□ 0.4
CLK3-216ENST00000564468 NARFQ9UHQ1 456 aa17.57■□□□□ 0.4
CLK3-216ENST00000564468 PARP3Q9Y6F1 533 aa17.57■□□□□ 0.4
CLK3-216ENST00000564468 LAMB4A4D0S4 1761 aa17.57■□□□□ 0.4
CLK3-216ENST00000564468 EIF5P55010 431 aaKnown RBP17.56■□□□□ 0.4
CLK3-216ENST00000564468 THUMPD2Q9BTF0 503 aaKnown RBP17.56■□□□□ 0.4
CLK3-216ENST00000564468 MIS18AQ9NYP9 233 aa17.56■□□□□ 0.4
CLK3-216ENST00000564468 USPL1Q5W0Q7 1092 aa17.55■□□□□ 0.4
CLK3-216ENST00000564468 SRP68Q9UHB9 627 aaKnown RBP17.55■□□□□ 0.4
CLK3-216ENST00000564468 RRP7AQ9Y3A4 280 aaKnown RBP17.55■□□□□ 0.4
CLK3-216ENST00000564468 USP16Q9Y5T5 823 aa17.55■□□□□ 0.4
CLK3-216ENST00000564468 KIF13BQ9NQT8 1826 aa17.55■□□□□ 0.4
CLK3-216ENST00000564468 MRS2Q9HD23 443 aa17.54■□□□□ 0.4
CLK3-216ENST00000564468 TSPYL4Q9UJ04 414 aa17.54■□□□□ 0.4
CLK3-216ENST00000564468 ATP10DQ9P241 1426 aa17.54■□□□□ 0.4
CLK3-216ENST00000564468 A1BGP04217 495 aa17.53■□□□□ 0.4
CLK3-216ENST00000564468 EIF4A1P60842 406 aaKnown RBP17.53■□□□□ 0.4
CLK3-216ENST00000564468 FKBP8Q14318 412 aa17.53■□□□□ 0.4
CLK3-216ENST00000564468 ZNF330Q9Y3S2 320 aaPredicted RBP17.53■□□□□ 0.4
CLK3-216ENST00000564468 HSPA6P17066 643 aa17.52■□□□□ 0.4
CLK3-216ENST00000564468 CALD1Q05682 793 aaKnown RBP17.51■□□□□ 0.39
CLK3-216ENST00000564468 TRIM35Q9UPQ4 493 aa17.51■□□□□ 0.39
CLK3-216ENST00000564468 AFDNP55196 1824 aaKnown RBP17.5■□□□□ 0.39
CLK3-216ENST00000564468 PRAMEF22A3QJZ6 481 aa17.5■□□□□ 0.39
CLK3-216ENST00000564468 APAF1O14727 1248 aa17.5■□□□□ 0.39
CLK3-216ENST00000564468 TM4SF1P30408 202 aa17.5■□□□□ 0.39
CLK3-216ENST00000564468 CCDC184Q52MB2 194 aa17.5■□□□□ 0.39
CLK3-216ENST00000564468 SCN7AQ01118 1682 aa17.5■□□□□ 0.39
CLK3-216ENST00000564468 TGFB2P61812 414 aa17.49■□□□□ 0.39
CLK3-216ENST00000564468 DZIP3Q86Y13 1208 aaKnown RBP17.49■□□□□ 0.39
CLK3-216ENST00000564468 BCORQ6W2J9 1755 aa17.48■□□□□ 0.39
CLK3-216ENST00000564468 ZNF526Q8TF50 670 aaPredicted RBP17.48■□□□□ 0.39
CLK3-216ENST00000564468 TBC1D2BQ9UPU7 963 aa17.48■□□□□ 0.39
CLK3-216ENST00000564468 LAS1LQ9Y4W2 734 aaKnown RBP17.48■□□□□ 0.39
CLK3-216ENST00000564468 C10orf71Q711Q0 1435 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 POLRMTO00411 1230 aaKnown RBP17.47■□□□□ 0.39
CLK3-216ENST00000564468 CHL1O00533 1208 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 NFIXQ14938 502 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 BCL2L12Q9HB09 334 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 ZNF652Q9Y2D9 606 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 N4BP2Q86UW6 1770 aaPredicted RBP17.47■□□□□ 0.39
CLK3-216ENST00000564468 ERBB4Q15303 1308 aa17.47■□□□□ 0.39
CLK3-216ENST00000564468 RGL2O15211 777 aa17.46■□□□□ 0.39
CLK3-216ENST00000564468 DDR1Q08345 913 aa17.46■□□□□ 0.39
CLK3-216ENST00000564468 CLEC4GQ6UXB4 293 aa17.46■□□□□ 0.39
CLK3-216ENST00000564468 CFAP44Q96MT7 982 aa17.46■□□□□ 0.39
CLK3-216ENST00000564468 NRXN2Q9P2S2 1712 aa17.46■□□□□ 0.39
CLK3-216ENST00000564468 NBPF26B4DH59 902 aa17.45■□□□□ 0.38
CLK3-216ENST00000564468 CAMTA2O94983 1202 aa17.45■□□□□ 0.38
CLK3-216ENST00000564468 PIP4K2AP48426 406 aaPredicted RBP17.45■□□□□ 0.38
CLK3-216ENST00000564468 NBPF10Q6P3W6 841 aaKnown RBP17.45■□□□□ 0.38
CLK3-216ENST00000564468 NBPF15Q8N660 670 aa17.45■□□□□ 0.38
CLK3-216ENST00000564468 SERPINB2P05120 415 aa17.44■□□□□ 0.38
CLK3-216ENST00000564468 GNAI1P63096 354 aa17.44■□□□□ 0.38
CLK3-216ENST00000564468 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
CLK3-216ENST00000564468 NUP98P52948 1817 aa17.44■□□□□ 0.38
CLK3-216ENST00000564468 KIAA1551Q9HCM1 1747 aa17.44■□□□□ 0.38
CLK3-216ENST00000564468 ADCY9O60503 1353 aa17.43■□□□□ 0.38
CLK3-216ENST00000564468 BICDL1Q6ZP65 573 aa17.43■□□□□ 0.38
CLK3-216ENST00000564468 SETDB2Q96T68 719 aa17.43■□□□□ 0.38
CLK3-216ENST00000564468 IFT57Q9NWB7 429 aa17.43■□□□□ 0.38
CLK3-216ENST00000564468 BRCA1P38398 1863 aaKnown RBP17.43■□□□□ 0.38
CLK3-216ENST00000564468 CARMIL3Q8ND23 1372 aa17.42■□□□□ 0.38
CLK3-216ENST00000564468 HOXB7P09629 217 aa17.42■□□□□ 0.38
CLK3-216ENST00000564468 EIF2S2P20042 333 aaKnown RBP17.42■□□□□ 0.38
CLK3-216ENST00000564468 CCDC27Q2M243 656 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms