RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 DNAAF2Q9NVR5 837 aaKnown RBP9.16□□□□□ -0.94
VPS13C-210ENST00000561258 CHIC2Q9UKJ5 165 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 GDF10P55107 478 aa9.15□□□□□ -0.94
VPS13C-210ENST00000561258 TBC1D9Q6ZT07 1266 aa9.15□□□□□ -0.94
VPS13C-210ENST00000561258 K7ELQ4 463 aaPredicted RBP9.14□□□□□ -0.95
VPS13C-210ENST00000561258 INHAP05111 366 aa9.14□□□□□ -0.95
VPS13C-210ENST00000561258 ATP4AP20648 1035 aa9.14□□□□□ -0.95
VPS13C-210ENST00000561258 AIDAQ96BJ3 306 aa9.14□□□□□ -0.95
VPS13C-210ENST00000561258 BTBD6Q96KE9 485 aa9.14□□□□□ -0.95
VPS13C-210ENST00000561258 HCN2Q9UL51 889 aa9.14□□□□□ -0.95
VPS13C-210ENST00000561258 NEURL1BA8MQ27 555 aa9.13□□□□□ -0.95
VPS13C-210ENST00000561258 FURINP09958 794 aa9.13□□□□□ -0.95
VPS13C-210ENST00000561258 EPXP11678 715 aa9.13□□□□□ -0.95
VPS13C-210ENST00000561258 SIRT1Q96EB6 747 aa9.13□□□□□ -0.95
VPS13C-210ENST00000561258 PCDHGC4Q9Y5F7 938 aa9.13□□□□□ -0.95
VPS13C-210ENST00000561258 TRIM26Q12899 539 aaPredicted RBP9.12□□□□□ -0.95
VPS13C-210ENST00000561258 FIGNL1Q6PIW4 674 aa9.12□□□□□ -0.95
VPS13C-210ENST00000561258 GDPD2Q9HCC8 539 aa9.12□□□□□ -0.95
VPS13C-210ENST00000561258 PRM3Q9NNZ6 103 aa9.12□□□□□ -0.95
VPS13C-210ENST00000561258 SERTAD1Q9UHV2 236 aa9.12□□□□□ -0.95
VPS13C-210ENST00000561258 ARAFP10398 606 aa9.11□□□□□ -0.95
VPS13C-210ENST00000561258 SMTNP53814 917 aa9.11□□□□□ -0.95
VPS13C-210ENST00000561258 ALYREFQ86V81 257 aaKnown RBP9.11□□□□□ -0.95
VPS13C-210ENST00000561258 NIFKQ9BYG3 293 aaKnown RBP9.11□□□□□ -0.95
VPS13C-210ENST00000561258 DCDC2BA2VCK2 349 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 GNB5O14775 395 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 ATXN7O15265 892 aaPredicted RBP9.1□□□□□ -0.95
VPS13C-210ENST00000561258 ABL2P42684 1182 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 NLRP8Q86W28 1048 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 PLPP7Q8NBV4 271 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 KLF15Q9UIH9 416 aa9.1□□□□□ -0.95
VPS13C-210ENST00000561258 A0A1W2PNR3 127 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 C1QTNF9BB2RNN3 333 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 MAPTP10636 758 aaKnown RBP9.09□□□□□ -0.95
VPS13C-210ENST00000561258 CD33P20138 364 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 DGKGP49619 791 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 ARSJQ5FYB0 599 aaPredicted RBP9.09□□□□□ -0.95
VPS13C-210ENST00000561258 CCDC82Q8N4S0 544 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 C1orf216Q8TAB5 229 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 USP3Q9Y6I4 520 aa9.09□□□□□ -0.95
VPS13C-210ENST00000561258 TMEM229AB2RXF0 380 aa9.08□□□□□ -0.96
VPS13C-210ENST00000561258 TNP2Q05952 138 aa9.08□□□□□ -0.96
VPS13C-210ENST00000561258 ZNF295-AS1Q8N0V1 137 aa9.08□□□□□ -0.96
VPS13C-210ENST00000561258 KHNYNO15037 678 aaKnown RBP9.07□□□□□ -0.96
VPS13C-210ENST00000561258 MAP7D1Q3KQU3 841 aa9.07□□□□□ -0.96
VPS13C-210ENST00000561258 CHSY3Q70JA7 882 aa9.07□□□□□ -0.96
VPS13C-210ENST00000561258 CD163Q86VB7 1156 aa9.07□□□□□ -0.96
VPS13C-210ENST00000561258 PROSER2Q86WR7 435 aaPredicted RBP9.07□□□□□ -0.96
VPS13C-210ENST00000561258 FCHSD1Q86WN1 690 aa9.06□□□□□ -0.96
VPS13C-210ENST00000561258 ZIC5Q96T25 663 aa9.06□□□□□ -0.96
VPS13C-210ENST00000561258 IQSEC3Q9UPP2 1182 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-210ENST00000561258 A6NJY4 79 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 PIK3R2O00459 728 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 ADH6P28332 368 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 CHRNA4P43681 627 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 MTFR1Q15390 333 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 NBPF1Q3BBV0 1214 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 FNBP4Q8N3X1 1017 aaPredicted RBP9.05□□□□□ -0.96
VPS13C-210ENST00000561258 SLC4A9Q96Q91 983 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 PARP3Q9Y6F1 533 aa9.05□□□□□ -0.96
VPS13C-210ENST00000561258 PIK3CDO00329 1044 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 CDK2AP1O14519 115 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 PCBP4P57723 403 aaKnown RBP9.04□□□□□ -0.96
VPS13C-210ENST00000561258 SEMA3FQ13275 785 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 FAM182BQ5T319 152 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 POM121Q96HA1 1249 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 CABP1Q9NZU7 370 aa9.04□□□□□ -0.96
VPS13C-210ENST00000561258 TATP17735 454 aaPredicted RBP9.03□□□□□ -0.96
VPS13C-210ENST00000561258 WASHC4Q2M389 1173 aa9.03□□□□□ -0.96
VPS13C-210ENST00000561258 STRN4Q9NRL3 753 aa9.03□□□□□ -0.96
VPS13C-210ENST00000561258 ZDHHC3Q9NYG2 299 aa9.03□□□□□ -0.96
VPS13C-210ENST00000561258 NOP53Q9NZM5 478 aaKnown RBP9.03□□□□□ -0.96
VPS13C-210ENST00000561258 PCDHGA11Q9Y5H2 935 aa9.03□□□□□ -0.96
VPS13C-210ENST00000561258 GJA3Q9Y6H8 435 aa9.02□□□□□ -0.97
VPS13C-210ENST00000561258 FAM157BP0CG42 384 aa9.01□□□□□ -0.97
VPS13C-210ENST00000561258 Q8N3U1 123 aa9.01□□□□□ -0.97
VPS13C-210ENST00000561258 TRIM11Q96F44 468 aa9.01□□□□□ -0.97
VPS13C-210ENST00000561258 AVENQ9NQS1 362 aaPredicted RBP9.01□□□□□ -0.97
VPS13C-210ENST00000561258 PRR12Q9ULL5 1215 aa9.01□□□□□ -0.97
VPS13C-210ENST00000561258 RAD21O60216 631 aa9□□□□□ -0.97
VPS13C-210ENST00000561258 TXLNAP40222 546 aa9□□□□□ -0.97
VPS13C-210ENST00000561258 ZNF468Q5VIY5 522 aaPredicted RBP9□□□□□ -0.97
VPS13C-210ENST00000561258 BICDL1Q6ZP65 573 aa9□□□□□ -0.97
VPS13C-210ENST00000561258 ZNF777Q9ULD5 760 aaPredicted RBP9□□□□□ -0.97
VPS13C-210ENST00000561258 DOC2BQ14184 412 aa8.99□□□□□ -0.97
VPS13C-210ENST00000561258 ZDHHC1Q8WTX9 485 aa8.99□□□□□ -0.97
VPS13C-210ENST00000561258 MARK1Q9P0L2 795 aa8.99□□□□□ -0.97
VPS13C-210ENST00000561258 COG6Q9Y2V7 657 aa8.99□□□□□ -0.97
VPS13C-210ENST00000561258 EFSO43281 561 aa8.98□□□□□ -0.97
VPS13C-210ENST00000561258 SOX11P35716 441 aa8.98□□□□□ -0.97
VPS13C-210ENST00000561258 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS13C-210ENST00000561258 PLVAPQ9BX97 442 aa8.98□□□□□ -0.97
VPS13C-210ENST00000561258 SKIP12755 728 aa8.97□□□□□ -0.97
VPS13C-210ENST00000561258 PDIA4P13667 645 aaKnown RBP8.97□□□□□ -0.97
VPS13C-210ENST00000561258 ITGB7P26010 798 aa8.97□□□□□ -0.97
VPS13C-210ENST00000561258 EML3Q32P44 896 aa8.97□□□□□ -0.97
VPS13C-210ENST00000561258 SAMD5Q5TGI4 173 aa8.97□□□□□ -0.97
VPS13C-210ENST00000561258 ZNF358Q9NW07 568 aa8.97□□□□□ -0.97
VPS13C-210ENST00000561258 SCHIP1Q9P0W5 487 aaPredicted RBP8.97□□□□□ -0.97
VPS13C-210ENST00000561258 GTF2IP78347 998 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 288.1 ms