RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 IL6STP40189 918 aaPredicted RBP13.77□□□□□ -0.21
TPM1-229ENST00000561242 SOS1Q07889 1333 aaPredicted RBP13.77□□□□□ -0.21
TPM1-229ENST00000561242 DUSP27Q5VZP5 1158 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 KLHL34Q8N239 644 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 NECTIN2Q92692 538 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 USP16Q9Y5T5 823 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 DDX58O95786 925 aaKnown RBP13.76□□□□□ -0.21
TPM1-229ENST00000561242 GTF2E1P29083 439 aaPredicted RBP13.76□□□□□ -0.21
TPM1-229ENST00000561242 ATF5Q9Y2D1 282 aaPredicted RBP13.76□□□□□ -0.21
TPM1-229ENST00000561242 PARP3Q9Y6F1 533 aa13.76□□□□□ -0.21
TPM1-229ENST00000561242 ERBB4Q15303 1308 aa13.75□□□□□ -0.21
TPM1-229ENST00000561242 A1BGP04217 495 aa13.75□□□□□ -0.21
TPM1-229ENST00000561242 ZNF827Q17R98 1081 aa13.75□□□□□ -0.21
TPM1-229ENST00000561242 TWISTNBQ3B726 338 aaPredicted RBP13.75□□□□□ -0.21
TPM1-229ENST00000561242 DZIP3Q86Y13 1208 aaKnown RBP13.75□□□□□ -0.21
TPM1-229ENST00000561242 ARHGEF1Q92888 912 aaKnown RBP13.75□□□□□ -0.21
TPM1-229ENST00000561242 ANO8Q9HCE9 1232 aaPredicted RBP13.75□□□□□ -0.21
TPM1-229ENST00000561242 DBF4Q9UBU7 674 aaPredicted RBP13.75□□□□□ -0.21
TPM1-229ENST00000561242 DOT1LQ8TEK3 1739 aa13.75□□□□□ -0.21
TPM1-229ENST00000561242 COL23A1Q86Y22 540 aaPredicted RBP13.74□□□□□ -0.21
TPM1-229ENST00000561242 TSR2Q969E8 191 aaKnown RBP13.74□□□□□ -0.21
TPM1-229ENST00000561242 HYPKQ9NX55 129 aa13.74□□□□□ -0.21
TPM1-229ENST00000561242 ZBTB1Q9Y2K1 713 aa13.74□□□□□ -0.21
TPM1-229ENST00000561242 AIMP1Q12904 312 aaKnown RBP13.73□□□□□ -0.21
TPM1-229ENST00000561242 PNPLA7Q6ZV29 1317 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 MSL1Q68DK7 614 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 INTS5Q6P9B9 1019 aaKnown RBP13.72□□□□□ -0.21
TPM1-229ENST00000561242 SLC4A9Q96Q91 983 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 SETDB2Q96T68 719 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 TBC1D2BQ9UPU7 963 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 MRC1P22897 1456 aa13.72□□□□□ -0.21
TPM1-229ENST00000561242 ZNF853P0CG23 659 aa13.71□□□□□ -0.21
TPM1-229ENST00000561242 HSP90AB3PQ58FF7 597 aa13.71□□□□□ -0.21
TPM1-229ENST00000561242 BICDL1Q6ZP65 573 aa13.71□□□□□ -0.21
TPM1-229ENST00000561242 RIC3Q7Z5B4 369 aa13.71□□□□□ -0.21
TPM1-229ENST00000561242 YTHDC1Q96MU7 727 aaKnown RBP13.71□□□□□ -0.21
TPM1-229ENST00000561242 NARFQ9UHQ1 456 aa13.71□□□□□ -0.21
TPM1-229ENST00000561242 BTAF1O14981 1849 aa13.71□□□□□ -0.22
TPM1-229ENST00000561242 EXOSC9Q06265 439 aaKnown RBP13.7□□□□□ -0.22
TPM1-229ENST00000561242 NEXNQ0ZGT2 675 aa13.7□□□□□ -0.22
TPM1-229ENST00000561242 USPL1Q5W0Q7 1092 aa13.7□□□□□ -0.22
TPM1-229ENST00000561242 DDX21Q9NR30 783 aaKnown RBP eCLIP13.7□□□□□ -0.22
TPM1-229ENST00000561242 FANCIQ9NVI1 1328 aa13.69□□□□□ -0.22
TPM1-229ENST00000561242 PRAMEF22A3QJZ6 481 aa13.69□□□□□ -0.22
TPM1-229ENST00000561242 EIF5P55010 431 aaKnown RBP13.69□□□□□ -0.22
TPM1-229ENST00000561242 ZNF428Q96B54 188 aa13.69□□□□□ -0.22
TPM1-229ENST00000561242 COL15A1P39059 1388 aa13.69□□□□□ -0.22
TPM1-229ENST00000561242 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
TPM1-229ENST00000561242 CT47B1P0C2W7 299 aaPredicted RBP13.68□□□□□ -0.22
TPM1-229ENST00000561242 HSP90B1P14625 803 aaKnown RBP13.68□□□□□ -0.22
TPM1-229ENST00000561242 PIP4K2AP48426 406 aaPredicted RBP13.68□□□□□ -0.22
TPM1-229ENST00000561242 CLEC4GQ6UXB4 293 aa13.68□□□□□ -0.22
TPM1-229ENST00000561242 C8orf58Q8NAV2 365 aa13.68□□□□□ -0.22
TPM1-229ENST00000561242 CHPF2Q9P2E5 772 aa13.68□□□□□ -0.22
TPM1-229ENST00000561242 SHANK3Q9BYB0 1731 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 ERVV-1B6SEH8 477 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 MMP10P09238 476 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 ST5P78524 1137 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 SLFN5Q08AF3 891 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 TPTE2Q6XPS3 522 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 COPS6Q7L5N1 327 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 PPP1R42Q7Z4L9 355 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 XAGE3Q8WTP9 111 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 NYXQ9GZU5 481 aa13.67□□□□□ -0.22
TPM1-229ENST00000561242 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
TPM1-229ENST00000561242 USP42Q9H9J4 1324 aaKnown RBP13.66□□□□□ -0.22
TPM1-229ENST00000561242 KRT24Q2M2I5 525 aa13.66□□□□□ -0.22
TPM1-229ENST00000561242 ANKRD13DQ6ZTN6 518 aa13.66□□□□□ -0.22
TPM1-229ENST00000561242 NBPF5PQ86XG9 351 aaPredicted RBP13.66□□□□□ -0.22
TPM1-229ENST00000561242 TMX4Q9H1E5 349 aaPredicted RBP13.66□□□□□ -0.22
TPM1-229ENST00000561242 ZBTB3Q9H5J0 574 aa13.66□□□□□ -0.22
TPM1-229ENST00000561242 SRP68Q9UHB9 627 aaKnown RBP13.66□□□□□ -0.22
TPM1-229ENST00000561242 NIP7Q9Y221 180 aaKnown RBP eCLIP13.66□□□□□ -0.22
TPM1-229ENST00000561242 SBF2Q86WG5 1849 aa13.66□□□□□ -0.22
TPM1-229ENST00000561242 SCN11AQ9UI33 1791 aa13.66□□□□□ -0.22
TPM1-229ENST00000561242 FKBP5Q13451 457 aaPredicted RBP13.65□□□□□ -0.22
TPM1-229ENST00000561242 SMIM5Q71RC9 77 aa13.65□□□□□ -0.22
TPM1-229ENST00000561242 ZBED9Q6R2W3 1325 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 MAP3K15Q6ZN16 1313 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 FAM177BA6PVY3 158 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 TCERG1O14776 1098 aaKnown RBP13.64□□□□□ -0.23
TPM1-229ENST00000561242 RGL2O15211 777 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 IPO8O15397 1037 aaKnown RBP13.64□□□□□ -0.23
TPM1-229ENST00000561242 GYS1P13807 737 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 PARP10Q53GL7 1025 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 PELP1Q8IZL8 1130 aaKnown RBP13.64□□□□□ -0.23
TPM1-229ENST00000561242 PLBD2Q8NHP8 589 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 SMC4Q9NTJ3 1288 aa13.64□□□□□ -0.23
TPM1-229ENST00000561242 RGPD3A6NKT7 1758 aaPredicted RBP13.63□□□□□ -0.23
TPM1-229ENST00000561242 RGPD4Q7Z3J3 1758 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 ITGB4P16144 1822 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 VAMP4O75379 141 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 ANXA1P04083 346 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 SERPINB2P05120 415 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 FKBP8Q14318 412 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 TOGARAM1Q9Y4F4 1720 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 KCPQ6ZWJ8 1503 aa13.63□□□□□ -0.23
TPM1-229ENST00000561242 NBPF26B4DH59 902 aa13.62□□□□□ -0.23
TPM1-229ENST00000561242 NBPF10Q6P3W6 841 aaKnown RBP13.62□□□□□ -0.23
TPM1-229ENST00000561242 NBPF15Q8N660 670 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms