RNA–Protein interactions for RNA: ENST00000561128.1

CHRNA3-208, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-208ENST00000561128 BCL2L12Q9HB09 334 aa16.88■□□□□ 0.29
CHRNA3-208ENST00000561128 BRCA1P38398 1863 aaKnown RBP16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 HMGB2P26583 209 aaKnown RBP16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 PIP4K2AP48426 406 aaPredicted RBP16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 TTC5Q8N0Z6 440 aa16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 CD2APQ9Y5K6 639 aa16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 NRXN2Q9P2S2 1712 aa16.87■□□□□ 0.29
CHRNA3-208ENST00000561128 AFDNP55196 1824 aaKnown RBP16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 BTBD11A6QL63 1104 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 CANXP27824 592 aaKnown RBP16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 GPR162Q16538 588 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 USPL1Q5W0Q7 1092 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 VSIG10Q8N0Z9 540 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 MIS18AQ9NYP9 233 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 CHD4Q14839 1912 aa16.86■□□□□ 0.29
CHRNA3-208ENST00000561128 NFE2L2Q16236 605 aa16.85■□□□□ 0.29
CHRNA3-208ENST00000561128 A1BGP04217 495 aa16.84■□□□□ 0.29
CHRNA3-208ENST00000561128 PRKRIP1Q9H875 184 aaPredicted RBP16.84■□□□□ 0.29
CHRNA3-208ENST00000561128 EIF5P55010 431 aaKnown RBP16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 CCDC146Q8IYE0 955 aa16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 NLGN1Q8N2Q7 840 aa16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 RTF1Q92541 710 aaKnown RBP16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 FMNL2Q96PY5 1086 aa16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 USP16Q9Y5T5 823 aa16.83■□□□□ 0.28
CHRNA3-208ENST00000561128 POLRMTO00411 1230 aaKnown RBP16.82■□□□□ 0.28
CHRNA3-208ENST00000561128 DCAF8L1A6NGE4 600 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 HTATSF1O43719 755 aaKnown RBP16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 TM4SF1P30408 202 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 NFIXQ14938 502 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 CCDC184Q52MB2 194 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 NARFQ9UHQ1 456 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 RRP7AQ9Y3A4 280 aaKnown RBP16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 ANKRD31Q8N7Z5 1873 aa16.81■□□□□ 0.28
CHRNA3-208ENST00000561128 UTRNP46939 3433 aa16.8■□□□□ 0.28
CHRNA3-208ENST00000561128 COL11A2P13942 1736 aaPredicted RBP16.8■□□□□ 0.28
CHRNA3-208ENST00000561128 A0A0G2JLW4 131 aa16.8■□□□□ 0.28
CHRNA3-208ENST00000561128 MAPK8IP3Q9UPT6 1336 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 NBPF26B4DH59 902 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 STARD3NLO95772 234 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 DPEP1P16444 411 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 NBPF10Q6P3W6 841 aaKnown RBP16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 NBPF15Q8N660 670 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 ZNF330Q9Y3S2 320 aaPredicted RBP16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 PARP3Q9Y6F1 533 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 GOLGB1Q14789 3259 aaKnown RBP16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 DLEC1Q9Y238 1755 aa16.79■□□□□ 0.28
CHRNA3-208ENST00000561128 KCNA3P22001 575 aa16.78■□□□□ 0.28
CHRNA3-208ENST00000561128 TAF7Q15545 349 aaPredicted RBP16.78■□□□□ 0.28
CHRNA3-208ENST00000561128 ZNF784Q8NCA9 323 aaPredicted RBP16.78■□□□□ 0.28
CHRNA3-208ENST00000561128 TBC1D2BQ9UPU7 963 aa16.78■□□□□ 0.28
CHRNA3-208ENST00000561128 ZPR1O75312 459 aa16.77■□□□□ 0.28
CHRNA3-208ENST00000561128 CAMTA2O94983 1202 aa16.77■□□□□ 0.28
CHRNA3-208ENST00000561128 TMPOP42166 694 aaKnown RBP16.77■□□□□ 0.28
CHRNA3-208ENST00000561128 TBC1D9BQ66K14 1250 aa16.77■□□□□ 0.28
CHRNA3-208ENST00000561128 ADAMTS8Q9UP79 889 aa16.77■□□□□ 0.28
CHRNA3-208ENST00000561128 CHRNA5P30532 468 aa16.76■□□□□ 0.27
CHRNA3-208ENST00000561128 ZEB1P37275 1124 aaPredicted RBP16.76■□□□□ 0.27
CHRNA3-208ENST00000561128 BICDL1Q6ZP65 573 aa16.76■□□□□ 0.27
CHRNA3-208ENST00000561128 SNRPA1P09661 255 aaKnown RBP16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 IL6STP40189 918 aaPredicted RBP16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 RIPK4P57078 832 aa16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 EIF4A1P60842 406 aaKnown RBP16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 ADCY9O60503 1353 aa16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 ARFGEF1Q9Y6D6 1849 aa16.75■□□□□ 0.27
CHRNA3-208ENST00000561128 CCDC24Q8N4L8 307 aa16.74■□□□□ 0.27
CHRNA3-208ENST00000561128 TEX13AQ9BXU3 409 aaPredicted RBP16.74■□□□□ 0.27
CHRNA3-208ENST00000561128 TRIM35Q9UPQ4 493 aa16.74■□□□□ 0.27
CHRNA3-208ENST00000561128 NEFMP07197 916 aa16.73■□□□□ 0.27
CHRNA3-208ENST00000561128 NEUROD2Q15784 382 aa16.73■□□□□ 0.27
CHRNA3-208ENST00000561128 GIGYF1O75420 1035 aaPredicted RBP16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 SERPINB2P05120 415 aa16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 TGFB2P61812 414 aa16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 KRT24Q2M2I5 525 aa16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 DZIP3Q86Y13 1208 aaKnown RBP16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
CHRNA3-208ENST00000561128 SENP3-EIF4A1A0A087X0R7 540 aa16.71■□□□□ 0.27
CHRNA3-208ENST00000561128 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.27
CHRNA3-208ENST00000561128 WDR43Q15061 677 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHRNA3-208ENST00000561128 RUNDC1Q96C34 613 aa16.71■□□□□ 0.27
CHRNA3-208ENST00000561128 BCS1LQ9Y276 419 aa16.71■□□□□ 0.27
CHRNA3-208ENST00000561128 ATP10DQ9P241 1426 aa16.7■□□□□ 0.26
CHRNA3-208ENST00000561128 GRIN3BO60391 1043 aa16.7■□□□□ 0.26
CHRNA3-208ENST00000561128 A0A087WZG4 1122 aa16.69■□□□□ 0.26
CHRNA3-208ENST00000561128 PNNQ9H307 717 aaKnown RBP16.69■□□□□ 0.26
CHRNA3-208ENST00000561128 TSPYL4Q9UJ04 414 aa16.69■□□□□ 0.26
CHRNA3-208ENST00000561128 CACNA1SQ13698 1873 aa16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 HLFQ16534 295 aa16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 PROSER3Q2NL68 480 aa16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 PRR5LQ6MZQ0 368 aa16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 LRP10Q7Z4F1 713 aa16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 PNISRQ8TF01 805 aaKnown RBP16.68■□□□□ 0.26
CHRNA3-208ENST00000561128 ANXA1P04083 346 aa16.67■□□□□ 0.26
CHRNA3-208ENST00000561128 TTLL7Q6ZT98 887 aa16.67■□□□□ 0.26
CHRNA3-208ENST00000561128 NGEFQ8N5V2 710 aa16.67■□□□□ 0.26
CHRNA3-208ENST00000561128 NUP98P52948 1817 aa16.66■□□□□ 0.26
CHRNA3-208ENST00000561128 PDIA6Q15084 440 aa16.66■□□□□ 0.26
CHRNA3-208ENST00000561128 APAF1O14727 1248 aa16.65■□□□□ 0.26
CHRNA3-208ENST00000561128 MYL6BP14649 208 aa16.65■□□□□ 0.26
CHRNA3-208ENST00000561128 ABCC12Q96J65 1359 aa16.64■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms