RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 INTS5Q6P9B9 1019 aaKnown RBP28.32■■■□□ 2.12
SNX1-210ENST00000560260 R3HDM1Q15032 1099 aaKnown RBP28.31■■■□□ 2.12
SNX1-210ENST00000560260 CDCA7LQ96GN5 454 aa28.31■■■□□ 2.12
SNX1-210ENST00000560260 AK7Q96M32 723 aa28.31■■■□□ 2.12
SNX1-210ENST00000560260 GOLGA2Q08379 1002 aa28.3■■■□□ 2.12
SNX1-210ENST00000560260 RC3H1Q5TC82 1133 aaKnown RBP28.3■■■□□ 2.12
SNX1-210ENST00000560260 ZBTB1Q9Y2K1 713 aa28.3■■■□□ 2.12
SNX1-210ENST00000560260 CASZ1Q86V15 1759 aa28.29■■■□□ 2.12
SNX1-210ENST00000560260 PSDA5PKW4 1024 aaPredicted RBP28.29■■■□□ 2.12
SNX1-210ENST00000560260 GNPATO15228 680 aa28.29■■■□□ 2.12
SNX1-210ENST00000560260 C8orf58Q8NAV2 365 aa28.29■■■□□ 2.12
SNX1-210ENST00000560260 CCDC87Q9NVE4 849 aa28.29■■■□□ 2.12
SNX1-210ENST00000560260 TEX13AQ9BXU3 409 aaPredicted RBP28.28■■■□□ 2.12
SNX1-210ENST00000560260 PNPLA7Q6ZV29 1317 aa28.28■■■□□ 2.12
SNX1-210ENST00000560260 STARD3NLO95772 234 aa28.27■■■□□ 2.12
SNX1-210ENST00000560260 A1BGP04217 495 aa28.27■■■□□ 2.12
SNX1-210ENST00000560260 SLFN5Q08AF3 891 aa28.27■■■□□ 2.12
SNX1-210ENST00000560260 TSPYL6Q8N831 410 aa28.27■■■□□ 2.12
SNX1-210ENST00000560260 PIP4K2AP48426 406 aaPredicted RBP28.26■■■□□ 2.11
SNX1-210ENST00000560260 DUSP27Q5VZP5 1158 aa28.26■■■□□ 2.11
SNX1-210ENST00000560260 PDGFDQ9GZP0 370 aaPredicted RBP28.26■■■□□ 2.11
SNX1-210ENST00000560260 TFCP2L1Q9NZI6 479 aa28.26■■■□□ 2.11
SNX1-210ENST00000560260 ZBED9Q6R2W3 1325 aa28.26■■■□□ 2.11
SNX1-210ENST00000560260 C4AP0C0L4 1744 aa28.26■■■□□ 2.11
SNX1-210ENST00000560260 MYH16Q9H6N6 1097 aa28.25■■■□□ 2.11
SNX1-210ENST00000560260 E9PSI1 815 aa28.24■■■□□ 2.11
SNX1-210ENST00000560260 ELL2O00472 640 aaPredicted RBP28.24■■■□□ 2.11
SNX1-210ENST00000560260 SOS1Q07889 1333 aaPredicted RBP28.24■■■□□ 2.11
SNX1-210ENST00000560260 NBPF26B4DH59 902 aa28.23■■■□□ 2.11
SNX1-210ENST00000560260 RPS6KA4O75676 772 aa28.23■■■□□ 2.11
SNX1-210ENST00000560260 PHF14O94880 888 aa28.23■■■□□ 2.11
SNX1-210ENST00000560260 HMGB2P26583 209 aaKnown RBP28.23■■■□□ 2.11
SNX1-210ENST00000560260 EXOSC9Q06265 439 aaKnown RBP28.23■■■□□ 2.11
SNX1-210ENST00000560260 NBPF10Q6P3W6 841 aaKnown RBP28.23■■■□□ 2.11
SNX1-210ENST00000560260 NBPF15Q8N660 670 aa28.23■■■□□ 2.11
SNX1-210ENST00000560260 HOXB7P09629 217 aa28.22■■■□□ 2.11
SNX1-210ENST00000560260 CANXP27824 592 aaKnown RBP28.22■■■□□ 2.11
SNX1-210ENST00000560260 TRMT2AQ8IZ69 625 aaKnown RBP28.22■■■□□ 2.11
SNX1-210ENST00000560260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.21■■■□□ 2.11
SNX1-210ENST00000560260 EIF2S2P20042 333 aaKnown RBP28.21■■■□□ 2.11
SNX1-210ENST00000560260 COL23A1Q86Y22 540 aaPredicted RBP28.21■■■□□ 2.11
SNX1-210ENST00000560260 NECTIN2Q92692 538 aa28.21■■■□□ 2.11
SNX1-210ENST00000560260 SSFA2P28290 1259 aa28.2■■■□□ 2.11
SNX1-210ENST00000560260 RTCBQ9Y3I0 505 aaKnown RBP28.2■■■□□ 2.11
SNX1-210ENST00000560260 COL15A1P39059 1388 aa28.19■■■□□ 2.1
SNX1-210ENST00000560260 EIF5P55010 431 aaKnown RBP28.18■■■□□ 2.1
SNX1-210ENST00000560260 PDIA6Q15084 440 aa28.18■■■□□ 2.1
SNX1-210ENST00000560260 PROSER3Q2NL68 480 aa28.18■■■□□ 2.1
SNX1-210ENST00000560260 TWISTNBQ3B726 338 aaPredicted RBP28.18■■■□□ 2.1
SNX1-210ENST00000560260 HDGFL1Q5TGJ6 251 aa28.18■■■□□ 2.1
SNX1-210ENST00000560260 ARHGEF1Q92888 912 aaKnown RBP28.17■■■□□ 2.1
SNX1-210ENST00000560260 ERBB4Q15303 1308 aa28.16■■■□□ 2.1
SNX1-210ENST00000560260 ANXA1P04083 346 aa28.16■■■□□ 2.1
SNX1-210ENST00000560260 IL6STP40189 918 aaPredicted RBP28.16■■■□□ 2.1
SNX1-210ENST00000560260 LRP10Q7Z4F1 713 aa28.16■■■□□ 2.1
SNX1-210ENST00000560260 ADRA2BP18089 450 aa28.15■■■□□ 2.1
SNX1-210ENST00000560260 SCN7AQ01118 1682 aa28.14■■■□□ 2.1
SNX1-210ENST00000560260 VAMP4O75379 141 aa28.14■■■□□ 2.09
SNX1-210ENST00000560260 TRAPPC3LQ5T215 181 aa28.14■■■□□ 2.09
SNX1-210ENST00000560260 YTHDC1Q96MU7 727 aaKnown RBP28.14■■■□□ 2.09
SNX1-210ENST00000560260 CHPF2Q9P2E5 772 aa28.14■■■□□ 2.09
SNX1-210ENST00000560260 ZNF330Q9Y3S2 320 aaPredicted RBP28.14■■■□□ 2.09
SNX1-210ENST00000560260 FLAD1Q8NFF5 587 aa28.13■■■□□ 2.09
SNX1-210ENST00000560260 SRP68Q9UHB9 627 aaKnown RBP28.13■■■□□ 2.09
SNX1-210ENST00000560260 BCORQ6W2J9 1755 aa28.13■■■□□ 2.09
SNX1-210ENST00000560260 MYL6BP14649 208 aa28.12■■■□□ 2.09
SNX1-210ENST00000560260 MSH5O43196 834 aa28.11■■■□□ 2.09
SNX1-210ENST00000560260 DDX21Q9NR30 783 aaKnown RBP eCLIP28.11■■■□□ 2.09
SNX1-210ENST00000560260 USP42Q9H9J4 1324 aaKnown RBP28.1■■■□□ 2.09
SNX1-210ENST00000560260 TCERG1O14776 1098 aaKnown RBP28.1■■■□□ 2.09
SNX1-210ENST00000560260 COL24A1Q17RW2 1714 aa28.09■■■□□ 2.09
SNX1-210ENST00000560260 ZBTB7AO95365 584 aa28.08■■■□□ 2.09
SNX1-210ENST00000560260 RFC4P35249 363 aa28.08■■■□□ 2.09
SNX1-210ENST00000560260 TBC1D2BQ9UPU7 963 aa28.08■■■□□ 2.09
SNX1-210ENST00000560260 TTLL7Q6ZT98 887 aa28.07■■■□□ 2.08
SNX1-210ENST00000560260 DBF4Q9UBU7 674 aaPredicted RBP28.07■■■□□ 2.08
SNX1-210ENST00000560260 CCDC30Q5VVM6 783 aa28.06■■■□□ 2.08
SNX1-210ENST00000560260 BCL2L12Q9HB09 334 aa28.06■■■□□ 2.08
SNX1-210ENST00000560260 NARFQ9UHQ1 456 aa28.06■■■□□ 2.08
SNX1-210ENST00000560260 A0A087WZG4 1122 aa28.05■■■□□ 2.08
SNX1-210ENST00000560260 CAMTA2O94983 1202 aa28.05■■■□□ 2.08
SNX1-210ENST00000560260 GYS1P13807 737 aa28.05■■■□□ 2.08
SNX1-210ENST00000560260 USPL1Q5W0Q7 1092 aa28.05■■■□□ 2.08
SNX1-210ENST00000560260 MSL1Q68DK7 614 aa28.05■■■□□ 2.08
SNX1-210ENST00000560260 DZIP3Q86Y13 1208 aaKnown RBP28.05■■■□□ 2.08
SNX1-210ENST00000560260 SLC16A10Q8TF71 515 aa28.04■■■□□ 2.08
SNX1-210ENST00000560260 XAGE3Q8WTP9 111 aa28.03■■■□□ 2.08
SNX1-210ENST00000560260 MTFR1LQ9H019 292 aa28.03■■■□□ 2.08
SNX1-210ENST00000560260 PHAXQ9H814 394 aaKnown RBP28.03■■■□□ 2.08
SNX1-210ENST00000560260 ATF5Q9Y2D1 282 aaPredicted RBP28.02■■■□□ 2.08
SNX1-210ENST00000560260 FKBP8Q14318 412 aa28.01■■■□□ 2.07
SNX1-210ENST00000560260 COPS6Q7L5N1 327 aa28.01■■■□□ 2.07
SNX1-210ENST00000560260 ZPR1O75312 459 aa28■■■□□ 2.07
SNX1-210ENST00000560260 G2E3Q7L622 706 aa28■■■□□ 2.07
SNX1-210ENST00000560260 ARXQ96QS3 562 aa28■■■□□ 2.07
SNX1-210ENST00000560260 HYPKQ9NX55 129 aa28■■■□□ 2.07
SNX1-210ENST00000560260 AIMP1Q12904 312 aaKnown RBP27.99■■■□□ 2.07
SNX1-210ENST00000560260 NPM2Q86SE8 214 aaKnown RBP27.99■■■□□ 2.07
SNX1-210ENST00000560260 SGIP1Q9BQI5 828 aa27.99■■■□□ 2.07
SNX1-210ENST00000560260 STK31Q9BXU1 1019 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms