RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 EIF4A1P60842 406 aaKnown RBP11.19□□□□□ -0.62
USP3-217ENST00000560070 NECTIN2Q92692 538 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 ZBTB1Q9Y2K1 713 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 TOGARAM1Q9Y4F4 1720 aa11.18□□□□□ -0.62
USP3-217ENST00000560070 CNTNAP4Q9C0A0 1308 aa11.18□□□□□ -0.62
USP3-217ENST00000560070 EIF2S2P20042 333 aaKnown RBP11.18□□□□□ -0.62
USP3-217ENST00000560070 KRT24Q2M2I5 525 aa11.18□□□□□ -0.62
USP3-217ENST00000560070 SBF2Q86WG5 1849 aa11.18□□□□□ -0.62
USP3-217ENST00000560070 ELL2O00472 640 aaPredicted RBP11.17□□□□□ -0.62
USP3-217ENST00000560070 CHL1O00533 1208 aa11.17□□□□□ -0.62
USP3-217ENST00000560070 ZPR1O75312 459 aa11.17□□□□□ -0.62
USP3-217ENST00000560070 USPL1Q5W0Q7 1092 aa11.17□□□□□ -0.62
USP3-217ENST00000560070 NPM2Q86SE8 214 aaKnown RBP11.17□□□□□ -0.62
USP3-217ENST00000560070 TBC1D2BQ9UPU7 963 aa11.17□□□□□ -0.62
USP3-217ENST00000560070 KAT6BQ8WYB5 2073 aa11.16□□□□□ -0.62
USP3-217ENST00000560070 GIGYF1O75420 1035 aaPredicted RBP11.16□□□□□ -0.62
USP3-217ENST00000560070 MYL6BP14649 208 aa11.16□□□□□ -0.62
USP3-217ENST00000560070 GYS1P13807 737 aa11.15□□□□□ -0.62
USP3-217ENST00000560070 FKBP8Q14318 412 aa11.15□□□□□ -0.62
USP3-217ENST00000560070 BICDL1Q6ZP65 573 aa11.15□□□□□ -0.62
USP3-217ENST00000560070 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
USP3-217ENST00000560070 SGIP1Q9BQI5 828 aa11.15□□□□□ -0.62
USP3-217ENST00000560070 NUP188Q5SRE5 1749 aa11.15□□□□□ -0.63
USP3-217ENST00000560070 SOS1Q07889 1333 aaPredicted RBP11.14□□□□□ -0.63
USP3-217ENST00000560070 MRC1P22897 1456 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 NBPF26B4DH59 902 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 CCER2I3L3R5 266 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 MMP10P09238 476 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 EIF5P55010 431 aaKnown RBP11.14□□□□□ -0.63
USP3-217ENST00000560070 CALD1Q05682 793 aaKnown RBP11.14□□□□□ -0.63
USP3-217ENST00000560070 NBPF10Q6P3W6 841 aaKnown RBP11.14□□□□□ -0.63
USP3-217ENST00000560070 NLGN1Q8N2Q7 840 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 NBPF15Q8N660 670 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 CFAP44Q96MT7 982 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 FHDC1Q9C0D6 1143 aaPredicted RBP11.14□□□□□ -0.63
USP3-217ENST00000560070 MBIPQ9NS73 344 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 RREB1Q92766 1687 aa11.14□□□□□ -0.63
USP3-217ENST00000560070 A0A087WZG4 1122 aa11.13□□□□□ -0.63
USP3-217ENST00000560070 ANXA1P04083 346 aa11.13□□□□□ -0.63
USP3-217ENST00000560070 GNAI1P63096 354 aa11.13□□□□□ -0.63
USP3-217ENST00000560070 DZIP3Q86Y13 1208 aaKnown RBP11.13□□□□□ -0.63
USP3-217ENST00000560070 TSR2Q969E8 191 aaKnown RBP11.13□□□□□ -0.63
USP3-217ENST00000560070 BABAM1Q9NWV8 329 aa11.13□□□□□ -0.63
USP3-217ENST00000560070 KCPQ6ZWJ8 1503 aa11.13□□□□□ -0.63
USP3-217ENST00000560070 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 IL6STP40189 918 aaPredicted RBP11.12□□□□□ -0.63
USP3-217ENST00000560070 DUSP27Q5VZP5 1158 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
USP3-217ENST00000560070 SYT17Q9BSW7 474 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 BCL2L12Q9HB09 334 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 IFT57Q9NWB7 429 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 NARFQ9UHQ1 456 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 WWC3Q9ULE0 1092 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 PARP3Q9Y6F1 533 aa11.12□□□□□ -0.63
USP3-217ENST00000560070 USP42Q9H9J4 1324 aaKnown RBP11.11□□□□□ -0.63
USP3-217ENST00000560070 TCERG1O14776 1098 aaKnown RBP11.11□□□□□ -0.63
USP3-217ENST00000560070 AIMP1Q12904 312 aaKnown RBP11.11□□□□□ -0.63
USP3-217ENST00000560070 C8orf58Q8NAV2 365 aa11.11□□□□□ -0.63
USP3-217ENST00000560070 PAPPAQ13219 1627 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 FAM177BA6PVY3 158 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 TM4SF1P30408 202 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 CCDC27Q2M243 656 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 TBC1D9BQ66K14 1250 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 TTLL7Q6ZT98 887 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 CCDC24Q8N4L8 307 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 NLGN2Q8NFZ4 835 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 SPINK5Q9NQ38 1064 aaPredicted RBP11.1□□□□□ -0.63
USP3-217ENST00000560070 COL15A1P39059 1388 aa11.1□□□□□ -0.63
USP3-217ENST00000560070 ITGB4P16144 1822 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 CAMTA2O94983 1202 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 DDR1Q08345 913 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 NFIXQ14938 502 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 PDIA6Q15084 440 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 HLFQ16534 295 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 PROSER3Q2NL68 480 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 HDGFL1Q5TGJ6 251 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 WDR63Q8IWG1 891 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 TSPYL6Q8N831 410 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 ZBTB3Q9H5J0 574 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 C4BP0C0L5 1744 aa11.09□□□□□ -0.63
USP3-217ENST00000560070 SERPINB2P05120 415 aa11.08□□□□□ -0.64
USP3-217ENST00000560070 ZNF428Q96B54 188 aa11.08□□□□□ -0.64
USP3-217ENST00000560070 CHPF2Q9P2E5 772 aa11.08□□□□□ -0.64
USP3-217ENST00000560070 RGPD3A6NKT7 1758 aaPredicted RBP11.08□□□□□ -0.64
USP3-217ENST00000560070 RGPD4Q7Z3J3 1758 aa11.08□□□□□ -0.64
USP3-217ENST00000560070 LY75O60449 1722 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 A0A0G2JLW4 131 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 POLRMTO00411 1230 aaKnown RBP11.07□□□□□ -0.64
USP3-217ENST00000560070 NPHP1O15259 732 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 GPR162Q16538 588 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 KIF6Q6ZMV9 814 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 COPS6Q7L5N1 327 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 XAGE3Q8WTP9 111 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 SETDB2Q96T68 719 aa11.07□□□□□ -0.64
USP3-217ENST00000560070 SCN11AQ9UI33 1791 aa11.06□□□□□ -0.64
USP3-217ENST00000560070 ADAMTS7Q9UKP4 1686 aa11.06□□□□□ -0.64
USP3-217ENST00000560070 GPTP24298 496 aa11.06□□□□□ -0.64
USP3-217ENST00000560070 EXOSC9Q06265 439 aaKnown RBP11.06□□□□□ -0.64
USP3-217ENST00000560070 GOLGA2Q08379 1002 aa11.06□□□□□ -0.64
USP3-217ENST00000560070 IL16Q14005 1332 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms