RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.11□□□□□ -1.27
SPG11-220ENST00000559933 TMUB1Q9BVT8 246 aa7.11□□□□□ -1.27
SPG11-220ENST00000559933 PRKRIP1Q9H875 184 aaPredicted RBP7.11□□□□□ -1.27
SPG11-220ENST00000559933 OVOS2A0A0J9YW53 1432 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 OVOS2Q6IE36 1432 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 UBAP1LF5GYI3 381 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 FYB1O15117 783 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 ANP32CO43423 234 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 GRIPAP1Q4V328 841 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 KRT28Q7Z3Y7 464 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 PRKD2Q9BZL6 878 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 PHLPP1O60346 1717 aa7.1□□□□□ -1.27
SPG11-220ENST00000559933 PHRF1Q9P1Y6 1649 aaKnown RBP7.09□□□□□ -1.27
SPG11-220ENST00000559933 CGNL1Q0VF96 1302 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 MED1Q15648 1581 aaPredicted RBP7.09□□□□□ -1.27
SPG11-220ENST00000559933 PSME1Q06323 249 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 PHOX2BQ99453 314 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 ABCA3Q99758 1704 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 PEAK1Q9H792 1746 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 CRYBG1Q9Y4K1 1723 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 USP54Q70EL1 1684 aa7.09□□□□□ -1.27
SPG11-220ENST00000559933 TNS3Q68CZ2 1445 aa7.09□□□□□ -1.28
SPG11-220ENST00000559933 COL16A1Q07092 1604 aaPredicted RBP7.09□□□□□ -1.28
SPG11-220ENST00000559933 AHDC1Q5TGY3 1603 aaPredicted RBP7.09□□□□□ -1.28
SPG11-220ENST00000559933 TLL1O43897 1013 aa7.08□□□□□ -1.28
SPG11-220ENST00000559933 ADH1BP00325 375 aa7.08□□□□□ -1.28
SPG11-220ENST00000559933 ATP6V1AP38606 617 aa7.08□□□□□ -1.28
SPG11-220ENST00000559933 PUS10Q3MIT2 529 aaKnown RBP7.08□□□□□ -1.28
SPG11-220ENST00000559933 MORC1Q86VD1 984 aa7.08□□□□□ -1.28
SPG11-220ENST00000559933 V9GY48 417 aaPredicted RBP7.08□□□□□ -1.28
SPG11-220ENST00000559933 NFAT5O94916 1531 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 NPHP3Q7Z494 1330 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 IQSEC2Q5JU85 1478 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 SENP3-EIF4A1A0A087X0R7 540 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 PPP2R1AP30153 589 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 GCGRP47871 477 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 MDM2Q00987 491 aaPredicted RBP7.07□□□□□ -1.28
SPG11-220ENST00000559933 RRS1Q15050 365 aaKnown RBP7.07□□□□□ -1.28
SPG11-220ENST00000559933 SCUBE3Q8IX30 993 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 ABTB2Q8N961 1025 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 CABLES1Q8TDN4 633 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 CCDC102AQ96A19 550 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 NSD2O96028 1365 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 NPC1L1Q9UHC9 1359 aa7.07□□□□□ -1.28
SPG11-220ENST00000559933 SLIT3O75094 1523 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 SOS2Q07890 1332 aaPredicted RBP7.06□□□□□ -1.28
SPG11-220ENST00000559933 SPATA31A3Q5VYP0 1347 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 TTC21AQ8NDW8 1320 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 MYBBP1AQ9BQG0 1328 aaKnown RBP7.06□□□□□ -1.28
SPG11-220ENST00000559933 ZBTB7CA1YPR0 619 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 TOM1O60784 492 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 CLCN1P35523 988 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 FUT2Q10981 343 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 COG3Q96JB2 828 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 SPSB2Q99619 263 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 SLC6A16Q9GZN6 736 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 EMILIN1Q9Y6C2 1016 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 SHPRHQ149N8 1683 aa7.06□□□□□ -1.28
SPG11-220ENST00000559933 LTN1O94822 1766 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 COL3A1P02461 1466 aaPredicted RBP7.05□□□□□ -1.28
SPG11-220ENST00000559933 S1PR4O95977 384 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 LAPTM4AQ15012 233 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 RALBP1Q15311 655 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 MAP2P11137 1827 aaKnown RBP7.05□□□□□ -1.28
SPG11-220ENST00000559933 SBNO1A3KN83 1393 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 USP31Q70CQ4 1352 aa7.05□□□□□ -1.28
SPG11-220ENST00000559933 MAP3K19Q56UN5 1328 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 RNF223E7ERA6 249 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 PPM1GO15355 546 aaPredicted RBP7.04□□□□□ -1.28
SPG11-220ENST00000559933 FMNL1O95466 1100 aaPredicted RBP7.04□□□□□ -1.28
SPG11-220ENST00000559933 MORN1Q5T089 497 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 MRS2Q9HD23 443 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 GPCPD1Q9NPB8 672 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 POLKQ9UBT6 870 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 PNPLA6Q8IY17 1366 aa7.04□□□□□ -1.28
SPG11-220ENST00000559933 USP19O94966 1318 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 SMG6Q86US8 1419 aaKnown RBP7.03□□□□□ -1.28
SPG11-220ENST00000559933 COL22A1Q8NFW1 1626 aaPredicted RBP7.03□□□□□ -1.28
SPG11-220ENST00000559933 GFRA3O60609 400 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 MTHFSP49914 203 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 ZC3H6P61129 1189 aaKnown RBP7.03□□□□□ -1.28
SPG11-220ENST00000559933 Q6ZNB5 142 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 ANKLE1Q8NAG6 615 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 YTHDC1Q96MU7 727 aaKnown RBP7.03□□□□□ -1.28
SPG11-220ENST00000559933 RGPD5Q99666 1765 aa7.03□□□□□ -1.28
SPG11-220ENST00000559933 KDM4AO75164 1064 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 CD46P15529 392 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 HSPA1LP34931 641 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 SLC19A1P41440 591 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 CHRNA2Q15822 529 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 Q3C1V9 767 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 BARGINQ6ZT62 677 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 NLRP13Q86W25 1043 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 ZC3H15Q8WU90 426 aaKnown RBP7.02□□□□□ -1.29
SPG11-220ENST00000559933 ARHGEF10O15013 1369 aa7.02□□□□□ -1.29
SPG11-220ENST00000559933 BRD4O60885 1362 aaPredicted RBP7.02□□□□□ -1.29
SPG11-220ENST00000559933 CDK12Q9NYV4 1490 aaPredicted RBP7.02□□□□□ -1.29
SPG11-220ENST00000559933 LRP6O75581 1613 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 RGPD2P0DJD1 1756 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 COL18A1P39060 1754 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms