RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, human

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-215	ENST00000559774	HDGFL1	Q5TGJ6	251 aa		11.19	□□□□□ -0.62
LRRC28-215	ENST00000559774	NBPF14	Q5TI25	921 aa		11.19	□□□□□ -0.62
LRRC28-215	ENST00000559774	FLAD1	Q8NFF5	587 aa		11.19	□□□□□ -0.62
LRRC28-215	ENST00000559774	DBF4	Q9UBU7	674 aa	Predicted RBP	11.19	□□□□□ -0.62
LRRC28-215	ENST00000559774	USP16	Q9Y5T5	823 aa		11.19	□□□□□ -0.62
LRRC28-215	ENST00000559774	KAT6B	Q8WYB5	2073 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	RPS6KA4	O75676	772 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	IL6ST	P40189	918 aa	Predicted RBP	11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	CRKL	P46109	303 aa	Known RBP	11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	TSPYL6	Q8N831	410 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	LINC00116	Q8NCU8	138 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	AKT1S1	Q96B36	256 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	YTHDC1	Q96MU7	727 aa	Known RBP	11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	CCDC87	Q9NVE4	849 aa		11.18	□□□□□ -0.62
LRRC28-215	ENST00000559774	C5	P01031	1676 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	RGL2	O15211	777 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	SSFA2	P28290	1259 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	BRPF1	P55201	1214 aa	Predicted RBP	11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	KRT24	Q2M2I5	525 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	ALDH1L2	Q3SY69	923 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	INTS5	Q6P9B9	1019 aa	Known RBP	11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	AK7	Q96M32	723 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	HYPK	Q9NX55	129 aa		11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774	RTCB	Q9Y3I0	505 aa	Known RBP	11.17	□□□□□ -0.62
LRRC28-215	ENST00000559774		A0A087WZG4	1122 aa		11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	PRAMEF22	A3QJZ6	481 aa		11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	ELL2	O00472	640 aa	Predicted RBP	11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	EIF2S2	P20042	333 aa	Known RBP	11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	SLC15A2	Q16348	729 aa		11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	NPM2	Q86SE8	214 aa	Known RBP	11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	STK31	Q9BXU1	1019 aa		11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	STK32B	Q9NY57	414 aa		11.16	□□□□□ -0.62
LRRC28-215	ENST00000559774	RREB1	Q92766	1687 aa		11.15	□□□□□ -0.62
LRRC28-215	ENST00000559774	A1BG	P04217	495 aa		11.15	□□□□□ -0.62
LRRC28-215	ENST00000559774	EIF5	P55010	431 aa	Known RBP	11.15	□□□□□ -0.62
LRRC28-215	ENST00000559774	PDIA6	Q15084	440 aa		11.15	□□□□□ -0.62
LRRC28-215	ENST00000559774	NBPF26	B4DH59	902 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	GNPAT	O15228	680 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	KCNQ4	P56696	695 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	TRAPPC3L	Q5T215	181 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	NBPF10	Q6P3W6	841 aa	Known RBP	11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	LRP10	Q7Z4F1	713 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	NBPF15	Q8N660	670 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	TFCP2L1	Q9NZI6	479 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	ZBTB1	Q9Y2K1	713 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	TJP1	Q07157	1748 aa		11.14	□□□□□ -0.63
LRRC28-215	ENST00000559774	C4B	P0C0L5	1744 aa		11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	COL5A3	P25940	1745 aa	Predicted RBP	11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	SLC4A2	P04920	1241 aa		11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	RARS	P54136	660 aa	Known RBP	11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	CHPF2	Q9P2E5	772 aa		11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	LAMB4	A4D0S4	1761 aa		11.13	□□□□□ -0.63
LRRC28-215	ENST00000559774	ERVV-1	B6SEH8	477 aa		11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	CANX	P27824	592 aa	Known RBP	11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	ZNF827	Q17R98	1081 aa		11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	CLEC4G	Q6UXB4	293 aa		11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	SLC16A10	Q8TF71	515 aa		11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	COL15A1	P39059	1388 aa		11.12	□□□□□ -0.63
LRRC28-215	ENST00000559774	PTPRC	P08575	1304 aa		11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	DDX58	O95786	925 aa	Known RBP	11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	SSH1	Q8WYL5	1049 aa		11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	ARHGAP45	Q92619	1136 aa		11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	NARF	Q9UHQ1	456 aa		11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	TAF1L	Q8IZX4	1826 aa		11.11	□□□□□ -0.63
LRRC28-215	ENST00000559774	KIF16B	Q96L93	1317 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	NUP188	Q5SRE5	1749 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	ZPR1	O75312	459 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	MYL6B	P14649	208 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	RFC4	P35249	363 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	KIF6	Q6ZMV9	814 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	COPS6	Q7L5N1	327 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	DZIP3	Q86Y13	1208 aa	Known RBP	11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	MRPL50	Q8N5N7	158 aa	Known RBP	11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	NECTIN2	Q92692	538 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	ARHGEF1	Q92888	912 aa	Known RBP	11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	SMC4	Q9NTJ3	1288 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	RCAN3	Q9UKA8	241 aa		11.1	□□□□□ -0.63
LRRC28-215	ENST00000559774	PNPLA7	Q6ZV29	1317 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	IPO8	O15397	1037 aa	Known RBP	11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	FLII	Q13045	1269 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	PROSER3	Q2NL68	480 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	ANKRD13D	Q6ZTN6	518 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	PLBD2	Q8NHP8	589 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	XAGE3	Q8WTP9	111 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	ZNF652	Q9Y2D9	606 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	MAP3K15	Q6ZN16	1313 aa		11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	USP42	Q9H9J4	1324 aa	Known RBP	11.09	□□□□□ -0.63
LRRC28-215	ENST00000559774	CAMTA2	O94983	1202 aa		11.08	□□□□□ -0.64
LRRC28-215	ENST00000559774	HSP90AB3P	Q58FF7	597 aa		11.08	□□□□□ -0.64
LRRC28-215	ENST00000559774	KSR2	Q6VAB6	950 aa		11.08	□□□□□ -0.64
LRRC28-215	ENST00000559774	COL23A1	Q86Y22	540 aa	Predicted RBP	11.08	□□□□□ -0.64
LRRC28-215	ENST00000559774	NLGN1	Q8N2Q7	840 aa		11.08	□□□□□ -0.64
LRRC28-215	ENST00000559774	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.07	□□□□□ -0.64
LRRC28-215	ENST00000559774	PHF14	O94880	888 aa		11.07	□□□□□ -0.64
LRRC28-215	ENST00000559774	MS4A1	P11836	297 aa		11.07	□□□□□ -0.64
LRRC28-215	ENST00000559774	PIP4K2A	P48426	406 aa	Predicted RBP	11.07	□□□□□ -0.64
LRRC28-215	ENST00000559774	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms