RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 ZPR1O75312 459 aa10.82□□□□□ -0.68
SNX1-207ENST00000559401 GYS1P13807 737 aa10.82□□□□□ -0.68
SNX1-207ENST00000559401 NPM2Q86SE8 214 aaKnown RBP10.82□□□□□ -0.68
SNX1-207ENST00000559401 PLEKHF1Q96S99 279 aa10.82□□□□□ -0.68
SNX1-207ENST00000559401 PARP3Q9Y6F1 533 aa10.82□□□□□ -0.68
SNX1-207ENST00000559401 SOS1Q07889 1333 aaPredicted RBP10.82□□□□□ -0.68
SNX1-207ENST00000559401 USP42Q9H9J4 1324 aaKnown RBP10.82□□□□□ -0.68
SNX1-207ENST00000559401 KDM3BQ7LBC6 1761 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 KCNQ3O43525 872 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 YY1P25490 414 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 CCDC146Q8IYE0 955 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
SNX1-207ENST00000559401 TEX13AQ9BXU3 409 aaPredicted RBP10.81□□□□□ -0.68
SNX1-207ENST00000559401 WWC3Q9ULE0 1092 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 CD2APQ9Y5K6 639 aa10.81□□□□□ -0.68
SNX1-207ENST00000559401 CHD4Q14839 1912 aa10.8□□□□□ -0.68
SNX1-207ENST00000559401 TAF7Q15545 349 aaPredicted RBP10.8□□□□□ -0.68
SNX1-207ENST00000559401 USPL1Q5W0Q7 1092 aa10.8□□□□□ -0.68
SNX1-207ENST00000559401 LAMB4A4D0S4 1761 aa10.8□□□□□ -0.68
SNX1-207ENST00000559401 RIPK4P57078 832 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 FKBP8Q14318 412 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 NEUROD2Q15784 382 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 MIS18AQ9NYP9 233 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 RRP7AQ9Y3A4 280 aaKnown RBP10.79□□□□□ -0.68
SNX1-207ENST00000559401 N4BP2Q86UW6 1770 aaPredicted RBP10.79□□□□□ -0.68
SNX1-207ENST00000559401 KIF13BQ9NQT8 1826 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 SCN7AQ01118 1682 aa10.79□□□□□ -0.68
SNX1-207ENST00000559401 A0A087WZG4 1122 aa10.78□□□□□ -0.68
SNX1-207ENST00000559401 A1BGP04217 495 aa10.78□□□□□ -0.68
SNX1-207ENST00000559401 SNRPA1P09661 255 aaKnown RBP10.78□□□□□ -0.68
SNX1-207ENST00000559401 LMOD3Q0VAK6 560 aa10.78□□□□□ -0.68
SNX1-207ENST00000559401 PNISRQ8TF01 805 aaKnown RBP10.78□□□□□ -0.68
SNX1-207ENST00000559401 NARFQ9UHQ1 456 aa10.78□□□□□ -0.68
SNX1-207ENST00000559401 C10orf71Q711Q0 1435 aa10.77□□□□□ -0.68
SNX1-207ENST00000559401 PRAMEF22A3QJZ6 481 aa10.77□□□□□ -0.69
SNX1-207ENST00000559401 TMPOP42166 694 aaKnown RBP10.77□□□□□ -0.69
SNX1-207ENST00000559401 PIP4K2AP48426 406 aaPredicted RBP10.77□□□□□ -0.69
SNX1-207ENST00000559401 RUNDC1Q96C34 613 aa10.77□□□□□ -0.69
SNX1-207ENST00000559401 USP16Q9Y5T5 823 aa10.77□□□□□ -0.69
SNX1-207ENST00000559401 AFDNP55196 1824 aaKnown RBP10.77□□□□□ -0.69
SNX1-207ENST00000559401 KIAA1551Q9HCM1 1747 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 BCORQ6W2J9 1755 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 YBX3P16989 372 aaKnown RBP eCLIP10.76□□□□□ -0.69
SNX1-207ENST00000559401 IL6STP40189 918 aaPredicted RBP10.76□□□□□ -0.69
SNX1-207ENST00000559401 EIF5P55010 431 aaKnown RBP10.76□□□□□ -0.69
SNX1-207ENST00000559401 DDR1Q08345 913 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 BICDL1Q6ZP65 573 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 TSPYL4Q9UJ04 414 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 ADAMTS8Q9UP79 889 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 TBC1D2BQ9UPU7 963 aa10.76□□□□□ -0.69
SNX1-207ENST00000559401 PXDNLA1KZ92 1463 aa10.75□□□□□ -0.69
SNX1-207ENST00000559401 ANP32CO43423 234 aa10.75□□□□□ -0.69
SNX1-207ENST00000559401 GRIN3BO60391 1043 aa10.75□□□□□ -0.69
SNX1-207ENST00000559401 LAS1LQ9Y4W2 734 aaKnown RBP10.75□□□□□ -0.69
SNX1-207ENST00000559401 A0A0G2JLW4 131 aa10.74□□□□□ -0.69
SNX1-207ENST00000559401 POLRMTO00411 1230 aaKnown RBP10.74□□□□□ -0.69
SNX1-207ENST00000559401 NPHP1O15259 732 aa10.74□□□□□ -0.69
SNX1-207ENST00000559401 NFIXQ14938 502 aa10.74□□□□□ -0.69
SNX1-207ENST00000559401 DZIP3Q86Y13 1208 aaKnown RBP10.74□□□□□ -0.69
SNX1-207ENST00000559401 BCL2L12Q9HB09 334 aa10.74□□□□□ -0.69
SNX1-207ENST00000559401 DPEP1P16444 411 aa10.73□□□□□ -0.69
SNX1-207ENST00000559401 TM4SF1P30408 202 aa10.73□□□□□ -0.69
SNX1-207ENST00000559401 EIF4A1P60842 406 aaKnown RBP10.73□□□□□ -0.69
SNX1-207ENST00000559401 TGFB2P61812 414 aa10.73□□□□□ -0.69
SNX1-207ENST00000559401 NGEFQ8N5V2 710 aa10.73□□□□□ -0.69
SNX1-207ENST00000559401 BCS1LQ9Y276 419 aa10.73□□□□□ -0.69
SNX1-207ENST00000559401 NRXN2Q9P2S2 1712 aa10.72□□□□□ -0.69
SNX1-207ENST00000559401 BRCA1P38398 1863 aaKnown RBP10.72□□□□□ -0.69
SNX1-207ENST00000559401 SERPINB2P05120 415 aa10.72□□□□□ -0.69
SNX1-207ENST00000559401 TBC1D9BQ66K14 1250 aa10.72□□□□□ -0.69
SNX1-207ENST00000559401 NBPF26B4DH59 902 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 GIGYF1O75420 1035 aaPredicted RBP10.71□□□□□ -0.69
SNX1-207ENST00000559401 CAMTA2O94983 1202 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 MYL6BP14649 208 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 NBPF10Q6P3W6 841 aaKnown RBP10.71□□□□□ -0.69
SNX1-207ENST00000559401 NBPF15Q8N660 670 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 CARMIL3Q8ND23 1372 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 MRS2Q9HD23 443 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 ZNF652Q9Y2D9 606 aa10.71□□□□□ -0.69
SNX1-207ENST00000559401 DLEC1Q9Y238 1755 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 APAF1O14727 1248 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 EIF2S2P20042 333 aaKnown RBP10.7□□□□□ -0.7
SNX1-207ENST00000559401 CHRNA5P30532 468 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 CCDC184Q52MB2 194 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 SETDB2Q96T68 719 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 TRIM35Q9UPQ4 493 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 ANKRD31Q8N7Z5 1873 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 ARFGEF1Q9Y6D6 1849 aa10.7□□□□□ -0.7
SNX1-207ENST00000559401 SENP3-EIF4A1A0A087X0R7 540 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 KIF6Q6ZMV9 814 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 CCDC24Q8N4L8 307 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 CNBD1Q8NA66 436 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 BABAM1Q9NWV8 329 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 PIM2Q9P1W9 311 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 CACNA1SQ13698 1873 aa10.69□□□□□ -0.7
SNX1-207ENST00000559401 NUP98P52948 1817 aa10.68□□□□□ -0.7
SNX1-207ENST00000559401 FAM177BA6PVY3 158 aa10.68□□□□□ -0.7
SNX1-207ENST00000559401 ST5P78524 1137 aa10.68□□□□□ -0.7
SNX1-207ENST00000559401 DALRD3Q5D0E6 543 aaKnown RBP10.68□□□□□ -0.7
SNX1-207ENST00000559401 ARHGAP27Q6ZUM4 889 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms