RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SWI5Q1ZZU3 235 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 C1orf216Q8TAB5 229 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 GIPC2Q8TF65 315 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 CDCA7Q9BWT1 371 aaPredicted RBP6.94□□□□□ -1.3
LDLR-209ENST00000558528 SLIT1O75093 1534 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 MSH6P52701 1360 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 NKTRP30414 1462 aaKnown RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 ADGRB3O60242 1522 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 ST20-MTHFSA0A0A6YYL1 179 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 USP17L5A8MUK1 530 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 KCNA6P17658 529 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 PTPREP23469 700 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 LTKP29376 864 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 MCCD1P59942 119 aaPredicted RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 ZC3H6P61129 1189 aaKnown RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 SF3A1Q15459 793 aaKnown RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 NBPF1Q3BBV0 1214 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 DESI1Q6ICB0 168 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 RNF135Q8IUD6 432 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 FAM200AQ8TCP9 573 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 ZSWIM6Q9HCJ5 1215 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 COLQQ9Y215 455 aaPredicted RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 ZC3H4Q9UPT8 1303 aaKnown RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 CLTCL1P53675 1640 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 UBR1Q8IWV7 1749 aa6.93□□□□□ -1.3
LDLR-209ENST00000558528 BLMP54132 1417 aaPredicted RBP6.93□□□□□ -1.3
LDLR-209ENST00000558528 NRXN1Q9ULB1 1477 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 ZBBXA8MT70 800 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 RIMBP2O15034 1052 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 ANP32CO43423 234 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 C7P10643 843 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 MYT1Q01538 1121 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 NR6A1Q15406 480 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 EPS8L1Q8TE68 723 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 EGFL7Q9UHF1 273 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 KDM5AP29375 1690 aaKnown RBP6.92□□□□□ -1.3
LDLR-209ENST00000558528 CEP152O94986 1710 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 TMEM2Q9UHN6 1383 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 RIMS2Q9UQ26 1411 aa6.92□□□□□ -1.3
LDLR-209ENST00000558528 SKIP12755 728 aa6.91□□□□□ -1.3
LDLR-209ENST00000558528 COL9A1P20849 921 aa6.91□□□□□ -1.3
LDLR-209ENST00000558528 ATP2B4P23634 1241 aa6.91□□□□□ -1.3
LDLR-209ENST00000558528 DDX10Q13206 875 aaKnown RBP6.91□□□□□ -1.3
LDLR-209ENST00000558528 BIN2Q9UBW5 565 aaPredicted RBP6.91□□□□□ -1.3
LDLR-209ENST00000558528 UTRNP46939 3433 aa6.91□□□□□ -1.3
LDLR-209ENST00000558528 PIK3C2GO75747 1445 aa6.91□□□□□ -1.3
LDLR-209ENST00000558528 PIK3C2BO00750 1634 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 ANKRD33BA6NCL7 494 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 C1QTNF8P60827 252 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 GUCA2AQ02747 115 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 PTK7Q13308 1070 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 COL19A1Q14993 1142 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 DOK7Q18PE1 504 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 DEFB132Q7Z7B7 95 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 RETREG3Q86VR2 466 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 NPAS4Q8IUM7 802 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 UBXN4Q92575 508 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 HIRIP3Q9BW71 556 aaPredicted RBP6.9□□□□□ -1.3
LDLR-209ENST00000558528 MKRN1Q9UHC7 482 aaKnown RBP6.9□□□□□ -1.3
LDLR-209ENST00000558528 TBX22Q9Y458 520 aa6.9□□□□□ -1.3
LDLR-209ENST00000558528 CENPJQ9HC77 1338 aaPredicted RBP6.9□□□□□ -1.3
LDLR-209ENST00000558528 CCDC7Q96M83 1385 aa6.9□□□□□ -1.31
LDLR-209ENST00000558528 POGKQ9P215 609 aa6.89□□□□□ -1.31
LDLR-209ENST00000558528 WASHC2AQ641Q2 1341 aa6.89□□□□□ -1.31
LDLR-209ENST00000558528 SBNO2Q9Y2G9 1366 aa6.89□□□□□ -1.31
LDLR-209ENST00000558528 KIF1BO60333 1816 aa6.89□□□□□ -1.31
LDLR-209ENST00000558528 LAMC1P11047 1609 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 ATRNO75882 1429 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 PLEKHG1Q9ULL1 1385 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 KIF7Q2M1P5 1343 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 EVC2Q86UK5 1308 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 NUDT7P0C024 238 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 RASA1P20936 1047 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 CRTC2Q53ET0 693 aaPredicted RBP6.88□□□□□ -1.31
LDLR-209ENST00000558528 TRIM50Q86XT4 487 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 ANKMY2Q8IV38 441 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 ZNF784Q8NCA9 323 aaPredicted RBP6.88□□□□□ -1.31
LDLR-209ENST00000558528 TESK2Q96S53 571 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 TRAK1Q9UPV9 953 aa6.88□□□□□ -1.31
LDLR-209ENST00000558528 TMEM131LA2VDJ0 1609 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 NEXMIFQ5QGS0 1516 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 NCOA3Q9Y6Q9 1424 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 LRPPRCP42704 1394 aaKnown RBP6.87□□□□□ -1.31
LDLR-209ENST00000558528 ABCC11Q96J66 1382 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 PIK3R4Q99570 1358 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 PIK3CDO00329 1044 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 FBXO45P0C2W1 286 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 NCLP19338 710 aaKnown RBP6.87□□□□□ -1.31
LDLR-209ENST00000558528 SERPINB4P48594 390 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 ATP1A2P50993 1020 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 Q3C1V9 767 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 MAP7D1Q3KQU3 841 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 SLFNL1Q499Z3 407 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 TMEM132EQ6IEE7 984 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 POLR3GLQ9BT43 218 aa6.87□□□□□ -1.31
LDLR-209ENST00000558528 TRPC5Q9UL62 973 aaPredicted RBP6.87□□□□□ -1.31
LDLR-209ENST00000558528 CCER2I3L3R5 266 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 SLC10A3P09131 477 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 ATP6V1AP38606 617 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms