RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 LOC102724428A0A0B4J2F2 783 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 VAMP4O75379 141 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 ATP6V1AP38606 617 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 SIK1P57059 783 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 VSIG10Q8N0Z9 540 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 SLC4A9Q96Q91 983 aa12.39□□□□□ -0.43
CUX1-216ENST00000558469 CENPBP07199 599 aaPredicted RBP12.38□□□□□ -0.43
CUX1-216ENST00000558469 HOXB7P09629 217 aa12.38□□□□□ -0.43
CUX1-216ENST00000558469 EIF2S2P20042 333 aaKnown RBP12.38□□□□□ -0.43
CUX1-216ENST00000558469 SF3B2Q13435 895 aaKnown RBP12.38□□□□□ -0.43
CUX1-216ENST00000558469 NECTIN2Q92692 538 aa12.38□□□□□ -0.43
CUX1-216ENST00000558469 USP16Q9Y5T5 823 aa12.38□□□□□ -0.43
CUX1-216ENST00000558469 MYH14Q7Z406 1995 aaKnown RBP12.38□□□□□ -0.43
CUX1-216ENST00000558469 SOS1Q07889 1333 aaPredicted RBP12.37□□□□□ -0.43
CUX1-216ENST00000558469 CT47B1P0C2W7 299 aaPredicted RBP12.37□□□□□ -0.43
CUX1-216ENST00000558469 KCNQ4P56696 695 aa12.37□□□□□ -0.43
CUX1-216ENST00000558469 DNAJC10Q8IXB1 793 aa12.37□□□□□ -0.43
CUX1-216ENST00000558469 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
CUX1-216ENST00000558469 TCERG1O14776 1098 aaKnown RBP12.36□□□□□ -0.43
CUX1-216ENST00000558469 PLSCR1O15162 318 aa12.36□□□□□ -0.43
CUX1-216ENST00000558469 ITPK1Q13572 414 aa12.36□□□□□ -0.43
CUX1-216ENST00000558469 HDGFL1Q5TGJ6 251 aa12.36□□□□□ -0.43
CUX1-216ENST00000558469 ILDR2Q71H61 639 aa12.36□□□□□ -0.43
CUX1-216ENST00000558469 CCNL1Q9UK58 526 aaPredicted RBP12.36□□□□□ -0.43
CUX1-216ENST00000558469 STARD3NLO95772 234 aa12.35□□□□□ -0.43
CUX1-216ENST00000558469 CCDC30Q5VVM6 783 aa12.35□□□□□ -0.43
CUX1-216ENST00000558469 CHMP4AQ9BY43 222 aa12.35□□□□□ -0.43
CUX1-216ENST00000558469 RCAN3Q9UKA8 241 aa12.35□□□□□ -0.43
CUX1-216ENST00000558469 RREB1Q92766 1687 aa12.35□□□□□ -0.43
CUX1-216ENST00000558469 C4BP0C0L5 1744 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 CYP19A1P11511 503 aaPredicted RBP12.34□□□□□ -0.43
CUX1-216ENST00000558469 BAG6P46379 1132 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 RARSP54136 660 aaKnown RBP12.34□□□□□ -0.43
CUX1-216ENST00000558469 EN1Q05925 392 aaPredicted RBP12.34□□□□□ -0.43
CUX1-216ENST00000558469 TXNRD1Q16881 649 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 CCDC125Q86Z20 511 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 PROM2Q8N271 834 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 SSH1Q8WYL5 1049 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 ZNF428Q96B54 188 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 BCL2L13Q9BXK5 485 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 STK31Q9BXU1 1019 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 LRRC4BQ9NT99 713 aa12.34□□□□□ -0.43
CUX1-216ENST00000558469 BCAR3O75815 825 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 A1BGP04217 495 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 PIP4K2AP48426 406 aaPredicted RBP12.33□□□□□ -0.44
CUX1-216ENST00000558469 ALDH1L2Q3SY69 923 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 SLC27A3Q5K4L6 730 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 LINC00116Q8NCU8 138 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 SMC4Q9NTJ3 1288 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 CHPF2Q9P2E5 772 aa12.33□□□□□ -0.44
CUX1-216ENST00000558469 UBR3Q6ZT12 1888 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 NUP188Q5SRE5 1749 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 MYL6BP14649 208 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 CRKLP46109 303 aaKnown RBP12.32□□□□□ -0.44
CUX1-216ENST00000558469 EZH2Q15910 746 aaKnown RBP12.32□□□□□ -0.44
CUX1-216ENST00000558469 DEFB132Q7Z7B7 95 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 UPF1Q92900 1129 aaKnown RBP eCLIP12.32□□□□□ -0.44
CUX1-216ENST00000558469 CAMKK2Q96RR4 588 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 DBF4Q9UBU7 674 aaPredicted RBP12.32□□□□□ -0.44
CUX1-216ENST00000558469 TUBGCP6Q96RT7 1819 aa12.32□□□□□ -0.44
CUX1-216ENST00000558469 ANXA1P04083 346 aa12.31□□□□□ -0.44
CUX1-216ENST00000558469 CANXP27824 592 aaKnown RBP12.31□□□□□ -0.44
CUX1-216ENST00000558469 PDIA6Q15084 440 aa12.31□□□□□ -0.44
CUX1-216ENST00000558469 PROSER3Q2NL68 480 aa12.31□□□□□ -0.44
CUX1-216ENST00000558469 MRPL50Q8N5N7 158 aaKnown RBP12.31□□□□□ -0.44
CUX1-216ENST00000558469 DDX21Q9NR30 783 aaKnown RBP eCLIP12.31□□□□□ -0.44
CUX1-216ENST00000558469 CCDC87Q9NVE4 849 aa12.31□□□□□ -0.44
CUX1-216ENST00000558469 NBPF26B4DH59 902 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 NBPF14Q5TI25 921 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 NBPF10Q6P3W6 841 aaKnown RBP12.3□□□□□ -0.44
CUX1-216ENST00000558469 INTS5Q6P9B9 1019 aaKnown RBP12.3□□□□□ -0.44
CUX1-216ENST00000558469 NBPF15Q8N660 670 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 HYPKQ9NX55 129 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 ZBTB1Q9Y2K1 713 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 ERBB4Q15303 1308 aa12.3□□□□□ -0.44
CUX1-216ENST00000558469 HMGB2P26583 209 aaKnown RBP12.29□□□□□ -0.44
CUX1-216ENST00000558469 RC3H1Q5TC82 1133 aaKnown RBP12.29□□□□□ -0.44
CUX1-216ENST00000558469 G2E3Q7L622 706 aa12.29□□□□□ -0.44
CUX1-216ENST00000558469 FRAT1Q92837 279 aaPredicted RBP12.29□□□□□ -0.44
CUX1-216ENST00000558469 PHAXQ9H814 394 aaKnown RBP12.29□□□□□ -0.44
CUX1-216ENST00000558469 ZNF330Q9Y3S2 320 aaPredicted RBP12.29□□□□□ -0.44
CUX1-216ENST00000558469 NUP98P52948 1817 aa12.29□□□□□ -0.44
CUX1-216ENST00000558469 CNTNAP4Q9C0A0 1308 aa12.29□□□□□ -0.44
CUX1-216ENST00000558469 C4AP0C0L4 1744 aa12.28□□□□□ -0.44
CUX1-216ENST00000558469 ARFGEF2Q9Y6D5 1785 aa12.28□□□□□ -0.44
CUX1-216ENST00000558469 AIMP1Q12904 312 aaKnown RBP12.28□□□□□ -0.44
CUX1-216ENST00000558469 AK7Q96M32 723 aa12.28□□□□□ -0.44
CUX1-216ENST00000558469 NOB1Q9ULX3 412 aaKnown RBP12.28□□□□□ -0.44
CUX1-216ENST00000558469 GNPATO15228 680 aa12.27□□□□□ -0.45
CUX1-216ENST00000558469 IL6STP40189 918 aaPredicted RBP12.27□□□□□ -0.45
CUX1-216ENST00000558469 BRPF1P55201 1214 aaPredicted RBP12.27□□□□□ -0.45
CUX1-216ENST00000558469 FLIIQ13045 1269 aa12.27□□□□□ -0.45
CUX1-216ENST00000558469 LRP10Q7Z4F1 713 aa12.27□□□□□ -0.45
CUX1-216ENST00000558469 NPM2Q86SE8 214 aaKnown RBP12.27□□□□□ -0.45
CUX1-216ENST00000558469 XAGE3Q8WTP9 111 aa12.27□□□□□ -0.45
CUX1-216ENST00000558469 SUPT16HQ9Y5B9 1047 aaKnown RBP12.27□□□□□ -0.45
CUX1-216ENST00000558469 KIF16BQ96L93 1317 aa12.27□□□□□ -0.45
CUX1-216ENST00000558469 AFDNP55196 1824 aaKnown RBP12.27□□□□□ -0.45
CUX1-216ENST00000558469 QSER1Q2KHR3 1735 aa12.26□□□□□ -0.45
CUX1-216ENST00000558469 PLIN1O60240 522 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms