RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 TAF1LQ8IZX4 1826 aa27.49■■□□□ 1.99
CASC4-204ENST00000557945 TSPYL6Q8N831 410 aa27.48■■□□□ 1.99
CASC4-204ENST00000557945 ANO8Q9HCE9 1232 aaPredicted RBP27.48■■□□□ 1.99
CASC4-204ENST00000557945 CICQ96RK0 1608 aaPredicted RBP27.48■■□□□ 1.99
CASC4-204ENST00000557945 HOXB7P09629 217 aa27.48■■□□□ 1.99
CASC4-204ENST00000557945 ZNF827Q17R98 1081 aa27.48■■□□□ 1.99
CASC4-204ENST00000557945 TRMT2AQ8IZ69 625 aaKnown RBP27.48■■□□□ 1.99
CASC4-204ENST00000557945 NECTIN2Q92692 538 aa27.48■■□□□ 1.99
CASC4-204ENST00000557945 CNTNAP4Q9C0A0 1308 aa27.47■■□□□ 1.99
CASC4-204ENST00000557945 A1BGP04217 495 aa27.47■■□□□ 1.99
CASC4-204ENST00000557945 TWISTNBQ3B726 338 aaPredicted RBP27.47■■□□□ 1.99
CASC4-204ENST00000557945 RC3H1Q5TC82 1133 aaKnown RBP27.47■■□□□ 1.99
CASC4-204ENST00000557945 AKT1S1Q96B36 256 aa27.47■■□□□ 1.99
CASC4-204ENST00000557945 CCDC87Q9NVE4 849 aa27.47■■□□□ 1.99
CASC4-204ENST00000557945 C4BP0C0L5 1744 aa27.46■■□□□ 1.99
CASC4-204ENST00000557945 GNPATO15228 680 aa27.46■■□□□ 1.99
CASC4-204ENST00000557945 INTS5Q6P9B9 1019 aaKnown RBP27.46■■□□□ 1.99
CASC4-204ENST00000557945 TFCP2L1Q9NZI6 479 aa27.46■■□□□ 1.99
CASC4-204ENST00000557945 COL5A3P25940 1745 aaPredicted RBP27.46■■□□□ 1.99
CASC4-204ENST00000557945 CANXP27824 592 aaKnown RBP27.45■■□□□ 1.98
CASC4-204ENST00000557945 HDGFL1Q5TGJ6 251 aa27.45■■□□□ 1.98
CASC4-204ENST00000557945 SLC15A2Q16348 729 aa27.44■■□□□ 1.98
CASC4-204ENST00000557945 ZBTB1Q9Y2K1 713 aa27.44■■□□□ 1.98
CASC4-204ENST00000557945 PIP4K2AP48426 406 aaPredicted RBP27.43■■□□□ 1.98
CASC4-204ENST00000557945 SOS1Q07889 1333 aaPredicted RBP27.43■■□□□ 1.98
CASC4-204ENST00000557945 LAMB4A4D0S4 1761 aa27.42■■□□□ 1.98
CASC4-204ENST00000557945 PHF14O94880 888 aa27.41■■□□□ 1.98
CASC4-204ENST00000557945 RTCBQ9Y3I0 505 aaKnown RBP27.41■■□□□ 1.98
CASC4-204ENST00000557945 ZNF330Q9Y3S2 320 aaPredicted RBP27.41■■□□□ 1.98
CASC4-204ENST00000557945 VAMP4O75379 141 aa27.4■■□□□ 1.98
CASC4-204ENST00000557945 RPS6KA4O75676 772 aa27.4■■□□□ 1.98
CASC4-204ENST00000557945 SMIM5Q71RC9 77 aa27.4■■□□□ 1.98
CASC4-204ENST00000557945 CHMP4AQ9BY43 222 aa27.4■■□□□ 1.98
CASC4-204ENST00000557945 MYH14Q7Z406 1995 aaKnown RBP27.4■■□□□ 1.98
CASC4-204ENST00000557945 NBPF26B4DH59 902 aa27.38■■□□□ 1.97
CASC4-204ENST00000557945 MYL6BP14649 208 aa27.38■■□□□ 1.97
CASC4-204ENST00000557945 R3HDM1Q15032 1099 aaKnown RBP27.38■■□□□ 1.97
CASC4-204ENST00000557945 CCDC30Q5VVM6 783 aa27.38■■□□□ 1.97
CASC4-204ENST00000557945 NBPF10Q6P3W6 841 aaKnown RBP27.38■■□□□ 1.97
CASC4-204ENST00000557945 NPM2Q86SE8 214 aaKnown RBP27.38■■□□□ 1.97
CASC4-204ENST00000557945 NBPF15Q8N660 670 aa27.38■■□□□ 1.97
CASC4-204ENST00000557945 ERBB4Q15303 1308 aa27.38■■□□□ 1.97
CASC4-204ENST00000557945 TCERG1O14776 1098 aaKnown RBP27.37■■□□□ 1.97
CASC4-204ENST00000557945 AMIGO3Q86WK7 504 aa27.37■■□□□ 1.97
CASC4-204ENST00000557945 CHPF2Q9P2E5 772 aa27.37■■□□□ 1.97
CASC4-204ENST00000557945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.36■■□□□ 1.97
CASC4-204ENST00000557945 MSH5O43196 834 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 ANXA1P04083 346 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 SSFA2P28290 1259 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 IL6STP40189 918 aaPredicted RBP27.35■■□□□ 1.97
CASC4-204ENST00000557945 TRAPPC3LQ5T215 181 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 PSDA5PKW4 1024 aaPredicted RBP27.35■■□□□ 1.97
CASC4-204ENST00000557945 PROSER3Q2NL68 480 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 ARXQ96QS3 562 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 STK31Q9BXU1 1019 aa27.35■■□□□ 1.97
CASC4-204ENST00000557945 DDX21Q9NR30 783 aaKnown RBP eCLIP27.35■■□□□ 1.97
CASC4-204ENST00000557945 DBF4Q9UBU7 674 aaPredicted RBP27.35■■□□□ 1.97
CASC4-204ENST00000557945 PNPLA7Q6ZV29 1317 aa27.34■■□□□ 1.97
CASC4-204ENST00000557945 EIF5P55010 431 aaKnown RBP27.34■■□□□ 1.97
CASC4-204ENST00000557945 PDIA6Q15084 440 aa27.34■■□□□ 1.97
CASC4-204ENST00000557945 FLAD1Q8NFF5 587 aa27.34■■□□□ 1.97
CASC4-204ENST00000557945 UBR3Q6ZT12 1888 aa27.33■■□□□ 1.97
CASC4-204ENST00000557945 ADRA2BP18089 450 aa27.33■■□□□ 1.97
CASC4-204ENST00000557945 COL15A1P39059 1388 aa27.33■■□□□ 1.96
CASC4-204ENST00000557945 COL23A1Q86Y22 540 aaPredicted RBP27.32■■□□□ 1.96
CASC4-204ENST00000557945 ARHGEF1Q92888 912 aaKnown RBP27.32■■□□□ 1.96
CASC4-204ENST00000557945 A0A087WZG4 1122 aa27.31■■□□□ 1.96
CASC4-204ENST00000557945 CT47B1P0C2W7 299 aaPredicted RBP27.31■■□□□ 1.96
CASC4-204ENST00000557945 RFC4P35249 363 aa27.31■■□□□ 1.96
CASC4-204ENST00000557945 TUBGCP6Q96RT7 1819 aa27.31■■□□□ 1.96
CASC4-204ENST00000557945 HYPKQ9NX55 129 aa27.3■■□□□ 1.96
CASC4-204ENST00000557945 SLC4A2P04920 1241 aa27.28■■□□□ 1.96
CASC4-204ENST00000557945 AIMP1Q12904 312 aaKnown RBP27.28■■□□□ 1.96
CASC4-204ENST00000557945 PDGFDQ9GZP0 370 aaPredicted RBP27.28■■□□□ 1.96
CASC4-204ENST00000557945 TBC1D2BQ9UPU7 963 aa27.28■■□□□ 1.96
CASC4-204ENST00000557945 DZIP3Q86Y13 1208 aaKnown RBP27.27■■□□□ 1.96
CASC4-204ENST00000557945 XAGE3Q8WTP9 111 aa27.27■■□□□ 1.96
CASC4-204ENST00000557945 ZNF428Q96B54 188 aa27.27■■□□□ 1.96
CASC4-204ENST00000557945 ZPR1O75312 459 aa27.26■■□□□ 1.95
CASC4-204ENST00000557945 LRP10Q7Z4F1 713 aa27.26■■□□□ 1.95
CASC4-204ENST00000557945 KIF6Q6ZMV9 814 aa27.25■■□□□ 1.95
CASC4-204ENST00000557945 COPS6Q7L5N1 327 aa27.25■■□□□ 1.95
CASC4-204ENST00000557945 BCL2L13Q9BXK5 485 aa27.25■■□□□ 1.95
CASC4-204ENST00000557945 PHAXQ9H814 394 aaKnown RBP27.25■■□□□ 1.95
CASC4-204ENST00000557945 SRP68Q9UHB9 627 aaKnown RBP27.25■■□□□ 1.95
CASC4-204ENST00000557945 QSER1Q2KHR3 1735 aa27.25■■□□□ 1.95
CASC4-204ENST00000557945 TTLL7Q6ZT98 887 aa27.24■■□□□ 1.95
CASC4-204ENST00000557945 SSH1Q8WYL5 1049 aa27.24■■□□□ 1.95
CASC4-204ENST00000557945 SMC4Q9NTJ3 1288 aa27.23■■□□□ 1.95
CASC4-204ENST00000557945 NARFQ9UHQ1 456 aa27.23■■□□□ 1.95
CASC4-204ENST00000557945 ALDH1L2Q3SY69 923 aa27.22■■□□□ 1.95
CASC4-204ENST00000557945 USPL1Q5W0Q7 1092 aa27.22■■□□□ 1.95
CASC4-204ENST00000557945 USP42Q9H9J4 1324 aaKnown RBP27.22■■□□□ 1.95
CASC4-204ENST00000557945 RARSP54136 660 aaKnown RBP27.22■■□□□ 1.95
CASC4-204ENST00000557945 G2E3Q7L622 706 aa27.22■■□□□ 1.95
CASC4-204ENST00000557945 MRPL50Q8N5N7 158 aaKnown RBP27.21■■□□□ 1.95
CASC4-204ENST00000557945 ZBTB3Q9H5J0 574 aa27.21■■□□□ 1.95
CASC4-204ENST00000557945 C4AP0C0L4 1744 aa27.2■■□□□ 1.95
CASC4-204ENST00000557945 CAMTA2O94983 1202 aa27.2■■□□□ 1.94
CASC4-204ENST00000557945 MAP3K15Q6ZN16 1313 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms