RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 GNPATO15228 680 aa17.78■□□□□ 0.44
SHMT2-234ENST00000557703 NPM2Q86SE8 214 aaKnown RBP17.78■□□□□ 0.44
SHMT2-234ENST00000557703 PNPLA7Q6ZV29 1317 aa17.77■□□□□ 0.44
SHMT2-234ENST00000557703 A0A087WZG4 1122 aa17.77■□□□□ 0.44
SHMT2-234ENST00000557703 IL6STP40189 918 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-234ENST00000557703 INTS5Q6P9B9 1019 aaKnown RBP17.77■□□□□ 0.44
SHMT2-234ENST00000557703 TJP1Q07157 1748 aa17.76■□□□□ 0.43
SHMT2-234ENST00000557703 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.76■□□□□ 0.43
SHMT2-234ENST00000557703 RGL2O15211 777 aa17.76■□□□□ 0.43
SHMT2-234ENST00000557703 MTFR1LQ9H019 292 aa17.76■□□□□ 0.43
SHMT2-234ENST00000557703 MYH16Q9H6N6 1097 aa17.76■□□□□ 0.43
SHMT2-234ENST00000557703 MBIPQ9NS73 344 aa17.76■□□□□ 0.43
SHMT2-234ENST00000557703 LAS1LQ9Y4W2 734 aaKnown RBP17.76■□□□□ 0.43
SHMT2-234ENST00000557703 UBR3Q6ZT12 1888 aa17.75■□□□□ 0.43
SHMT2-234ENST00000557703 ZNF521Q96K83 1311 aa17.75■□□□□ 0.43
SHMT2-234ENST00000557703 MYH14Q7Z406 1995 aaKnown RBP17.75■□□□□ 0.43
SHMT2-234ENST00000557703 PSDA5PKW4 1024 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-234ENST00000557703 USP16Q9Y5T5 823 aa17.75■□□□□ 0.43
SHMT2-234ENST00000557703 EIF5P55010 431 aaKnown RBP17.74■□□□□ 0.43
SHMT2-234ENST00000557703 SPON1Q9HCB6 807 aa17.74■□□□□ 0.43
SHMT2-234ENST00000557703 RFC4P35249 363 aa17.73■□□□□ 0.43
SHMT2-234ENST00000557703 GOLGA2Q08379 1002 aa17.73■□□□□ 0.43
SHMT2-234ENST00000557703 COL23A1Q86Y22 540 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-234ENST00000557703 E9PSI1 815 aa17.72■□□□□ 0.43
SHMT2-234ENST00000557703 NLGN1Q8N2Q7 840 aa17.72■□□□□ 0.43
SHMT2-234ENST00000557703 ARHGEF1Q92888 912 aaKnown RBP17.72■□□□□ 0.43
SHMT2-234ENST00000557703 ZBTB1Q9Y2K1 713 aa17.72■□□□□ 0.43
SHMT2-234ENST00000557703 CASZ1Q86V15 1759 aa17.71■□□□□ 0.43
SHMT2-234ENST00000557703 MSH5O43196 834 aa17.7■□□□□ 0.42
SHMT2-234ENST00000557703 ZPR1O75312 459 aa17.7■□□□□ 0.42
SHMT2-234ENST00000557703 DUSP27Q5VZP5 1158 aa17.7■□□□□ 0.42
SHMT2-234ENST00000557703 NARFQ9UHQ1 456 aa17.7■□□□□ 0.42
SHMT2-234ENST00000557703 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-234ENST00000557703 COL15A1P39059 1388 aa17.69■□□□□ 0.42
SHMT2-234ENST00000557703 LAMB4A4D0S4 1761 aa17.69■□□□□ 0.42
SHMT2-234ENST00000557703 A1BGP04217 495 aa17.69■□□□□ 0.42
SHMT2-234ENST00000557703 CANXP27824 592 aaKnown RBP17.69■□□□□ 0.42
SHMT2-234ENST00000557703 POLD1P28340 1107 aa17.69■□□□□ 0.42
SHMT2-234ENST00000557703 TUBGCP6Q96RT7 1819 aa17.68■□□□□ 0.42
SHMT2-234ENST00000557703 PHF14O94880 888 aa17.68■□□□□ 0.42
SHMT2-234ENST00000557703 CLEC4GQ6UXB4 293 aa17.68■□□□□ 0.42
SHMT2-234ENST00000557703 DDX21Q9NR30 783 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHMT2-234ENST00000557703 DBF4Q9UBU7 674 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-234ENST00000557703 USP42Q9H9J4 1324 aaKnown RBP17.68■□□□□ 0.42
SHMT2-234ENST00000557703 PRAMEF22A3QJZ6 481 aa17.67■□□□□ 0.42
SHMT2-234ENST00000557703 HDGFL1Q5TGJ6 251 aa17.67■□□□□ 0.42
SHMT2-234ENST00000557703 CCDC30Q5VVM6 783 aa17.67■□□□□ 0.42
SHMT2-234ENST00000557703 ZNF428Q96B54 188 aa17.67■□□□□ 0.42
SHMT2-234ENST00000557703 FANCIQ9NVI1 1328 aa17.67■□□□□ 0.42
SHMT2-234ENST00000557703 CT47B1P0C2W7 299 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-234ENST00000557703 AMIGO3Q86WK7 504 aa17.66■□□□□ 0.42
SHMT2-234ENST00000557703 HYPKQ9NX55 129 aa17.66■□□□□ 0.42
SHMT2-234ENST00000557703 ZNF652Q9Y2D9 606 aa17.66■□□□□ 0.42
SHMT2-234ENST00000557703 NBPF26B4DH59 902 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 ERVV-1B6SEH8 477 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 ZBTB7AO95365 584 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 GYS1P13807 737 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 EIF2S2P20042 333 aaKnown RBP17.65■□□□□ 0.42
SHMT2-234ENST00000557703 SLFN5Q08AF3 891 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 NBPF10Q6P3W6 841 aaKnown RBP17.65■□□□□ 0.42
SHMT2-234ENST00000557703 NBPF15Q8N660 670 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 PDGFDQ9GZP0 370 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-234ENST00000557703 LRP5O75197 1615 aa17.65■□□□□ 0.42
SHMT2-234ENST00000557703 COL24A1Q17RW2 1714 aa17.64■□□□□ 0.41
SHMT2-234ENST00000557703 TWISTNBQ3B726 338 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-234ENST00000557703 TRMT2AQ8IZ69 625 aaKnown RBP17.64■□□□□ 0.41
SHMT2-234ENST00000557703 C8orf58Q8NAV2 365 aa17.64■□□□□ 0.41
SHMT2-234ENST00000557703 TSR2Q969E8 191 aaKnown RBP17.64■□□□□ 0.41
SHMT2-234ENST00000557703 SGIP1Q9BQI5 828 aa17.64■□□□□ 0.41
SHMT2-234ENST00000557703 SRCAPQ6ZRS2 3230 aa17.63■□□□□ 0.41
SHMT2-234ENST00000557703 PTGER2P43116 358 aa17.63■□□□□ 0.41
SHMT2-234ENST00000557703 HNRNPUQ00839 825 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHMT2-234ENST00000557703 PDIA6Q15084 440 aa17.63■□□□□ 0.41
SHMT2-234ENST00000557703 DZIP3Q86Y13 1208 aaKnown RBP17.63■□□□□ 0.41
SHMT2-234ENST00000557703 STK31Q9BXU1 1019 aa17.62■□□□□ 0.41
SHMT2-234ENST00000557703 ATF5Q9Y2D1 282 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-234ENST00000557703 ZBED9Q6R2W3 1325 aa17.62■□□□□ 0.41
SHMT2-234ENST00000557703 CACNA1FO60840 1977 aa17.62■□□□□ 0.41
SHMT2-234ENST00000557703 VAMP4O75379 141 aa17.61■□□□□ 0.41
SHMT2-234ENST00000557703 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
SHMT2-234ENST00000557703 KIF6Q6ZMV9 814 aa17.61■□□□□ 0.41
SHMT2-234ENST00000557703 LRP10Q7Z4F1 713 aa17.61■□□□□ 0.41
SHMT2-234ENST00000557703 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-234ENST00000557703 ZNF330Q9Y3S2 320 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-234ENST00000557703 CAMTA2O94983 1202 aa17.6■□□□□ 0.41
SHMT2-234ENST00000557703 EXOSC9Q06265 439 aaKnown RBP17.6■□□□□ 0.41
SHMT2-234ENST00000557703 USPL1Q5W0Q7 1092 aa17.6■□□□□ 0.41
SHMT2-234ENST00000557703 ARXQ96QS3 562 aa17.6■□□□□ 0.41
SHMT2-234ENST00000557703 C4AP0C0L4 1744 aa17.6■□□□□ 0.41
SHMT2-234ENST00000557703 MAP3K15Q6ZN16 1313 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 SENP3-EIF4A1A0A087X0R7 540 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 ELL2O00472 640 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-234ENST00000557703 MYL6BP14649 208 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 TM4SF1P30408 202 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 TSPYL6Q8N831 410 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 CHPF2Q9P2E5 772 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 PPP1R1BQ9UD71 204 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-234ENST00000557703 TBC1D2BQ9UPU7 963 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 PARP3Q9Y6F1 533 aa17.59■□□□□ 0.41
SHMT2-234ENST00000557703 DDX58O95786 925 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms