RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SMIM5Q71RC9 77 aa16.61■□□□□ 0.25
SHMT2-227ENST00000557269 AMIGO3Q86WK7 504 aa16.61■□□□□ 0.25
SHMT2-227ENST00000557269 NECTIN2Q92692 538 aa16.61■□□□□ 0.25
SHMT2-227ENST00000557269 C4BP0C0L5 1744 aa16.6■□□□□ 0.25
SHMT2-227ENST00000557269 A1BGP04217 495 aa16.6■□□□□ 0.25
SHMT2-227ENST00000557269 CRKLP46109 303 aaKnown RBP16.6■□□□□ 0.25
SHMT2-227ENST00000557269 PIP4K2AP48426 406 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-227ENST00000557269 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
SHMT2-227ENST00000557269 NBPF26B4DH59 902 aa16.59■□□□□ 0.25
SHMT2-227ENST00000557269 VAMP4O75379 141 aa16.59■□□□□ 0.25
SHMT2-227ENST00000557269 EIF2S2P20042 333 aaKnown RBP16.59■□□□□ 0.25
SHMT2-227ENST00000557269 TWISTNBQ3B726 338 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-227ENST00000557269 NBPF14Q5TI25 921 aa16.59■□□□□ 0.25
SHMT2-227ENST00000557269 NBPF10Q6P3W6 841 aaKnown RBP16.59■□□□□ 0.25
SHMT2-227ENST00000557269 NBPF15Q8N660 670 aa16.59■□□□□ 0.25
SHMT2-227ENST00000557269 TEX13AQ9BXU3 409 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-227ENST00000557269 MYH14Q7Z406 1995 aaKnown RBP16.58■□□□□ 0.25
SHMT2-227ENST00000557269 STARD3NLO95772 234 aa16.58■□□□□ 0.24
SHMT2-227ENST00000557269 CCDC87Q9NVE4 849 aa16.58■□□□□ 0.24
SHMT2-227ENST00000557269 ZBTB1Q9Y2K1 713 aa16.58■□□□□ 0.24
SHMT2-227ENST00000557269 CNTNAP4Q9C0A0 1308 aa16.58■□□□□ 0.24
SHMT2-227ENST00000557269 LAMB4A4D0S4 1761 aa16.58■□□□□ 0.24
SHMT2-227ENST00000557269 TCERG1O14776 1098 aaKnown RBP16.57■□□□□ 0.24
SHMT2-227ENST00000557269 HOXB7P09629 217 aa16.57■□□□□ 0.24
SHMT2-227ENST00000557269 CANXP27824 592 aaKnown RBP16.57■□□□□ 0.24
SHMT2-227ENST00000557269 PDIA6Q15084 440 aa16.57■□□□□ 0.24
SHMT2-227ENST00000557269 PROSER3Q2NL68 480 aa16.57■□□□□ 0.24
SHMT2-227ENST00000557269 RC3H1Q5TC82 1133 aaKnown RBP16.57■□□□□ 0.24
SHMT2-227ENST00000557269 GNPATO15228 680 aa16.56■□□□□ 0.24
SHMT2-227ENST00000557269 ANXA1P04083 346 aa16.56■□□□□ 0.24
SHMT2-227ENST00000557269 SLC15A2Q16348 729 aa16.56■□□□□ 0.24
SHMT2-227ENST00000557269 HDGFL1Q5TGJ6 251 aa16.56■□□□□ 0.24
SHMT2-227ENST00000557269 AK7Q96M32 723 aa16.56■□□□□ 0.24
SHMT2-227ENST00000557269 STK32BQ9NY57 414 aa16.55■□□□□ 0.24
SHMT2-227ENST00000557269 CHPF2Q9P2E5 772 aa16.55■□□□□ 0.24
SHMT2-227ENST00000557269 RPS6KA4O75676 772 aa16.54■□□□□ 0.24
SHMT2-227ENST00000557269 LRP10Q7Z4F1 713 aa16.54■□□□□ 0.24
SHMT2-227ENST00000557269 TFCP2L1Q9NZI6 479 aa16.54■□□□□ 0.24
SHMT2-227ENST00000557269 SOS1Q07889 1333 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-227ENST00000557269 PHF14O94880 888 aa16.53■□□□□ 0.24
SHMT2-227ENST00000557269 MYL6BP14649 208 aa16.53■□□□□ 0.24
SHMT2-227ENST00000557269 PDGFDQ9GZP0 370 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-227ENST00000557269 TUBGCP6Q96RT7 1819 aa16.53■□□□□ 0.24
SHMT2-227ENST00000557269 UBR3Q6ZT12 1888 aa16.52■□□□□ 0.24
SHMT2-227ENST00000557269 PNPLA7Q6ZV29 1317 aa16.52■□□□□ 0.24
SHMT2-227ENST00000557269 EIF5P55010 431 aaKnown RBP16.52■□□□□ 0.24
SHMT2-227ENST00000557269 RTCBQ9Y3I0 505 aaKnown RBP16.52■□□□□ 0.24
SHMT2-227ENST00000557269 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 IL6STP40189 918 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 R3HDM1Q15032 1099 aaKnown RBP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 CCDC30Q5VVM6 783 aa16.51■□□□□ 0.23
SHMT2-227ENST00000557269 COL23A1Q86Y22 540 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 DDX21Q9NR30 783 aaKnown RBP eCLIP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 ZNF330Q9Y3S2 320 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-227ENST00000557269 ERBB4Q15303 1308 aa16.5■□□□□ 0.23
SHMT2-227ENST00000557269 PSDA5PKW4 1024 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-227ENST00000557269 ARHGEF1Q92888 912 aaKnown RBP16.5■□□□□ 0.23
SHMT2-227ENST00000557269 DBF4Q9UBU7 674 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-227ENST00000557269 HMGB2P26583 209 aaKnown RBP16.49■□□□□ 0.23
SHMT2-227ENST00000557269 SSFA2P28290 1259 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 TRAPPC3LQ5T215 181 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 G2E3Q7L622 706 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 SSH1Q8WYL5 1049 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 BCL2L13Q9BXK5 485 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 PHAXQ9H814 394 aaKnown RBP16.49■□□□□ 0.23
SHMT2-227ENST00000557269 COL15A1P39059 1388 aa16.49■□□□□ 0.23
SHMT2-227ENST00000557269 SLC4A2P04920 1241 aa16.48■□□□□ 0.23
SHMT2-227ENST00000557269 CT47B1P0C2W7 299 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-227ENST00000557269 TTLL7Q6ZT98 887 aa16.48■□□□□ 0.23
SHMT2-227ENST00000557269 XAGE3Q8WTP9 111 aa16.48■□□□□ 0.23
SHMT2-227ENST00000557269 SRP68Q9UHB9 627 aaKnown RBP16.48■□□□□ 0.23
SHMT2-227ENST00000557269 TBC1D2BQ9UPU7 963 aa16.48■□□□□ 0.23
SHMT2-227ENST00000557269 RARSP54136 660 aaKnown RBP16.47■□□□□ 0.23
SHMT2-227ENST00000557269 COPS6Q7L5N1 327 aa16.47■□□□□ 0.23
SHMT2-227ENST00000557269 MRPL50Q8N5N7 158 aaKnown RBP16.47■□□□□ 0.23
SHMT2-227ENST00000557269 STK31Q9BXU1 1019 aa16.47■□□□□ 0.23
SHMT2-227ENST00000557269 HYPKQ9NX55 129 aa16.47■□□□□ 0.23
SHMT2-227ENST00000557269 C4AP0C0L4 1744 aa16.46■□□□□ 0.23
SHMT2-227ENST00000557269 QSER1Q2KHR3 1735 aa16.46■□□□□ 0.23
SHMT2-227ENST00000557269 ADRA2BP18089 450 aa16.46■□□□□ 0.23
SHMT2-227ENST00000557269 AIMP1Q12904 312 aaKnown RBP16.46■□□□□ 0.23
SHMT2-227ENST00000557269 ARXQ96QS3 562 aa16.46■□□□□ 0.23
SHMT2-227ENST00000557269 MSH5O43196 834 aa16.45■□□□□ 0.22
SHMT2-227ENST00000557269 RFC4P35249 363 aa16.45■□□□□ 0.22
SHMT2-227ENST00000557269 DZIP3Q86Y13 1208 aaKnown RBP16.45■□□□□ 0.22
SHMT2-227ENST00000557269 ZNF428Q96B54 188 aa16.45■□□□□ 0.22
SHMT2-227ENST00000557269 BCL2L12Q9HB09 334 aa16.45■□□□□ 0.22
SHMT2-227ENST00000557269 USP42Q9H9J4 1324 aaKnown RBP16.45■□□□□ 0.22
SHMT2-227ENST00000557269 BCAR3O75815 825 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 CAMTA2O94983 1202 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 HLFQ16534 295 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 ALDH1L2Q3SY69 923 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 USPL1Q5W0Q7 1092 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 FLAD1Q8NFF5 587 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 CHMP4AQ9BY43 222 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 SMC4Q9NTJ3 1288 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 NARFQ9UHQ1 456 aa16.44■□□□□ 0.22
SHMT2-227ENST00000557269 A0A087WZG4 1122 aa16.43■□□□□ 0.22
SHMT2-227ENST00000557269 ZBTB3Q9H5J0 574 aa16.43■□□□□ 0.22
SHMT2-227ENST00000557269 CASZ1Q86V15 1759 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms