RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 ANKRD26Q9UPS8 1709 aa14.84□□□□□ -0.03
SYNE2-221ENST00000556342 PHKG2P15735 406 aa14.84□□□□□ -0.03
SYNE2-221ENST00000556342 IFNL2Q8IZJ0 200 aa14.84□□□□□ -0.03
SYNE2-221ENST00000556342 HSPA6P17066 643 aa14.83□□□□□ -0.04
SYNE2-221ENST00000556342 ATP6V1AP38606 617 aa14.83□□□□□ -0.04
SYNE2-221ENST00000556342 ATG3Q9NT62 314 aa14.83□□□□□ -0.04
SYNE2-221ENST00000556342 POLKQ9UBT6 870 aa14.83□□□□□ -0.04
SYNE2-221ENST00000556342 COLQQ9Y215 455 aaPredicted RBP14.83□□□□□ -0.04
SYNE2-221ENST00000556342 MMP10P09238 476 aa14.82□□□□□ -0.04
SYNE2-221ENST00000556342 IRX5P78411 483 aaPredicted RBP14.82□□□□□ -0.04
SYNE2-221ENST00000556342 GOLGA2Q08379 1002 aa14.82□□□□□ -0.04
SYNE2-221ENST00000556342 TAOK2Q9UL54 1235 aa14.81□□□□□ -0.04
SYNE2-221ENST00000556342 KDRP35968 1356 aa14.81□□□□□ -0.04
SYNE2-221ENST00000556342 PLEKHG2Q9H7P9 1386 aa14.81□□□□□ -0.04
SYNE2-221ENST00000556342 EIF4A2Q14240 407 aaKnown RBP14.8□□□□□ -0.04
SYNE2-221ENST00000556342 PXDNLA1KZ92 1463 aa14.8□□□□□ -0.04
SYNE2-221ENST00000556342 CICQ96RK0 1608 aaPredicted RBP14.8□□□□□ -0.04
SYNE2-221ENST00000556342 KIF3CO14782 793 aa14.79□□□□□ -0.04
SYNE2-221ENST00000556342 MKRN3Q13064 507 aaKnown RBP14.79□□□□□ -0.04
SYNE2-221ENST00000556342 RTCBQ9Y3I0 505 aaKnown RBP14.79□□□□□ -0.04
SYNE2-221ENST00000556342 NLGN1Q8N2Q7 840 aa14.78□□□□□ -0.04
SYNE2-221ENST00000556342 SLC4A9Q96Q91 983 aa14.78□□□□□ -0.04
SYNE2-221ENST00000556342 C10orf71Q711Q0 1435 aa14.77□□□□□ -0.04
SYNE2-221ENST00000556342 ERVV-2B6SEH9 535 aa14.77□□□□□ -0.05
SYNE2-221ENST00000556342 PLCG2P16885 1265 aa14.77□□□□□ -0.05
SYNE2-221ENST00000556342 TNNT2P45379 298 aaPredicted RBP14.77□□□□□ -0.05
SYNE2-221ENST00000556342 TGFB2P61812 414 aa14.77□□□□□ -0.05
SYNE2-221ENST00000556342 TRAPPC3LQ5T215 181 aa14.77□□□□□ -0.05
SYNE2-221ENST00000556342 CNTNAP4Q9C0A0 1308 aa14.76□□□□□ -0.05
SYNE2-221ENST00000556342 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-221ENST00000556342 RC3H1Q5TC82 1133 aaKnown RBP14.76□□□□□ -0.05
SYNE2-221ENST00000556342 ARHGEF1Q92888 912 aaKnown RBP14.76□□□□□ -0.05
SYNE2-221ENST00000556342 ZFP91Q96JP5 570 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-221ENST00000556342 OCEL1Q9H607 264 aa14.76□□□□□ -0.05
SYNE2-221ENST00000556342 BCS1LQ9Y276 419 aa14.76□□□□□ -0.05
SYNE2-221ENST00000556342 A0A0G2JLW4 131 aa14.75□□□□□ -0.05
SYNE2-221ENST00000556342 RGL2O15211 777 aa14.75□□□□□ -0.05
SYNE2-221ENST00000556342 HSP90AB1P08238 724 aaKnown RBP14.75□□□□□ -0.05
SYNE2-221ENST00000556342 POTEJP0CG39 1038 aa14.75□□□□□ -0.05
SYNE2-221ENST00000556342 DCAF5Q96JK2 942 aa14.75□□□□□ -0.05
SYNE2-221ENST00000556342 KIF13BQ9NQT8 1826 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 RPS6KA4O75676 772 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 GYS1P13807 737 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 PLEKHO1Q53GL0 409 aaPredicted RBP14.74□□□□□ -0.05
SYNE2-221ENST00000556342 POLR3GLQ9BT43 218 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 CCDC87Q9NVE4 849 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 TIMELESSQ9UNS1 1208 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 KIAA1551Q9HCM1 1747 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 ZNF831Q5JPB2 1677 aa14.74□□□□□ -0.05
SYNE2-221ENST00000556342 KDM6AO15550 1401 aaPredicted RBP14.74□□□□□ -0.05
SYNE2-221ENST00000556342 DPEP1P16444 411 aa14.73□□□□□ -0.05
SYNE2-221ENST00000556342 RFC4P35249 363 aa14.73□□□□□ -0.05
SYNE2-221ENST00000556342 ZNF530Q6P9A1 599 aaPredicted RBP14.73□□□□□ -0.05
SYNE2-221ENST00000556342 CABP4P57796 275 aa14.72□□□□□ -0.05
SYNE2-221ENST00000556342 AMOTQ4VCS5 1084 aa14.72□□□□□ -0.05
SYNE2-221ENST00000556342 MAMSTRQ6ZN01 415 aa14.72□□□□□ -0.05
SYNE2-221ENST00000556342 ARHGAP27Q6ZUM4 889 aa14.72□□□□□ -0.05
SYNE2-221ENST00000556342 OTUD5Q96G74 571 aa14.72□□□□□ -0.05
SYNE2-221ENST00000556342 TOMM70O94826 608 aa14.71□□□□□ -0.05
SYNE2-221ENST00000556342 FCHSD2O94868 740 aa14.71□□□□□ -0.05
SYNE2-221ENST00000556342 APLP1P51693 650 aa14.71□□□□□ -0.05
SYNE2-221ENST00000556342 TRIM26Q12899 539 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-221ENST00000556342 PARP3Q9Y6F1 533 aa14.71□□□□□ -0.05
SYNE2-221ENST00000556342 C4AP0C0L4 1744 aa14.71□□□□□ -0.05
SYNE2-221ENST00000556342 N4BP2Q86UW6 1770 aaPredicted RBP14.7□□□□□ -0.06
SYNE2-221ENST00000556342 COL5A3P25940 1745 aaPredicted RBP14.7□□□□□ -0.06
SYNE2-221ENST00000556342 PTCD1O75127 700 aaKnown RBP14.69□□□□□ -0.06
SYNE2-221ENST00000556342 KCNA3P22001 575 aa14.69□□□□□ -0.06
SYNE2-221ENST00000556342 CRKLP46109 303 aaKnown RBP14.69□□□□□ -0.06
SYNE2-221ENST00000556342 MTHFSP49914 203 aa14.69□□□□□ -0.06
SYNE2-221ENST00000556342 AEBP1Q8IUX7 1158 aa14.69□□□□□ -0.06
SYNE2-221ENST00000556342 PANK3Q9H999 370 aa14.69□□□□□ -0.06
SYNE2-221ENST00000556342 NMRK2Q9NPI5 230 aa14.69□□□□□ -0.06
SYNE2-221ENST00000556342 C1orf141Q5JVX7 400 aa14.68□□□□□ -0.06
SYNE2-221ENST00000556342 PDCD7Q8N8D1 485 aaKnown RBP14.68□□□□□ -0.06
SYNE2-221ENST00000556342 USP42Q9H9J4 1324 aaKnown RBP14.67□□□□□ -0.06
SYNE2-221ENST00000556342 DDR1Q08345 913 aa14.67□□□□□ -0.06
SYNE2-221ENST00000556342 C9orf131Q5VYM1 1079 aa14.67□□□□□ -0.06
SYNE2-221ENST00000556342 NFATC2IPQ8NCF5 419 aa14.67□□□□□ -0.06
SYNE2-221ENST00000556342 PIM2Q9P1W9 311 aa14.67□□□□□ -0.06
SYNE2-221ENST00000556342 SRP68Q9UHB9 627 aaKnown RBP14.67□□□□□ -0.06
SYNE2-221ENST00000556342 MYH14Q7Z406 1995 aaKnown RBP14.67□□□□□ -0.06
SYNE2-221ENST00000556342 EFCAB3Q8N7B9 438 aa14.66□□□□□ -0.06
SYNE2-221ENST00000556342 DNAJC5GQ8N7S2 189 aa14.66□□□□□ -0.06
SYNE2-221ENST00000556342 CLSPNQ9HAW4 1339 aa14.66□□□□□ -0.06
SYNE2-221ENST00000556342 BRCA1P38398 1863 aaKnown RBP14.65□□□□□ -0.06
SYNE2-221ENST00000556342 EIF4G2P78344 907 aaKnown RBP eCLIP14.65□□□□□ -0.06
SYNE2-221ENST00000556342 DALRD3Q5D0E6 543 aaKnown RBP14.65□□□□□ -0.06
SYNE2-221ENST00000556342 SULT6B1Q6IMI4 303 aa14.65□□□□□ -0.06
SYNE2-221ENST00000556342 MORC1Q86VD1 984 aa14.65□□□□□ -0.06
SYNE2-221ENST00000556342 SCUBE2Q9NQ36 999 aa14.65□□□□□ -0.06
SYNE2-221ENST00000556342 INTS5Q6P9B9 1019 aaKnown RBP14.64□□□□□ -0.07
SYNE2-221ENST00000556342 RBM46Q8TBY0 533 aaKnown RBP14.64□□□□□ -0.07
SYNE2-221ENST00000556342 HSPA5P11021 654 aaKnown RBP14.63□□□□□ -0.07
SYNE2-221ENST00000556342 CHRNA5P30532 468 aa14.63□□□□□ -0.07
SYNE2-221ENST00000556342 POLRMTO00411 1230 aaKnown RBP14.62□□□□□ -0.07
SYNE2-221ENST00000556342 TM4SF1P30408 202 aa14.62□□□□□ -0.07
SYNE2-221ENST00000556342 IL13P35225 146 aa14.62□□□□□ -0.07
SYNE2-221ENST00000556342 TJP1Q07157 1748 aa14.62□□□□□ -0.07
SYNE2-221ENST00000556342 C16orf71Q8IYS4 520 aaPredicted RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms