RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 THBS1P07996 1170 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 GDF10P55107 478 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 SNRPNP63162 240 aaKnown RBP6.92□□□□□ -1.3
ATXN3-240ENST00000556339 TPRNQ4KMQ1 711 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 GDPD2Q9HCC8 539 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 HRH3Q9Y5N1 445 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 PIK3R2O00459 728 aa6.91□□□□□ -1.3
ATXN3-240ENST00000556339 SEMA3FQ13275 785 aa6.91□□□□□ -1.3
ATXN3-240ENST00000556339 GRIN2CQ14957 1233 aa6.91□□□□□ -1.3
ATXN3-240ENST00000556339 ARSJQ5FYB0 599 aaPredicted RBP6.91□□□□□ -1.3
ATXN3-240ENST00000556339 NIFKQ9BYG3 293 aaKnown RBP6.91□□□□□ -1.3
ATXN3-240ENST00000556339 GJA3Q9Y6H8 435 aa6.91□□□□□ -1.3
ATXN3-240ENST00000556339 URB2Q14146 1524 aaKnown RBP6.91□□□□□ -1.3
ATXN3-240ENST00000556339 INHAP05111 366 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 IRF5Q13568 498 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 WASHC4Q2M389 1173 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 NBPF1Q3BBV0 1214 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 PHTF2Q8N3S3 785 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 SERTAD1Q9UHV2 236 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 GGA1Q9UJY5 639 aa6.9□□□□□ -1.3
ATXN3-240ENST00000556339 SUPT5HO00267 1087 aaKnown RBP6.89□□□□□ -1.31
ATXN3-240ENST00000556339 BNIP3LO60238 219 aa6.89□□□□□ -1.31
ATXN3-240ENST00000556339 MAP7D1Q3KQU3 841 aa6.89□□□□□ -1.31
ATXN3-240ENST00000556339 SLCO4C1Q6ZQN7 724 aa6.89□□□□□ -1.31
ATXN3-240ENST00000556339 PLPP7Q8NBV4 271 aa6.89□□□□□ -1.31
ATXN3-240ENST00000556339 CRISPLD1Q9H336 500 aa6.89□□□□□ -1.31
ATXN3-240ENST00000556339 DCDC2BA2VCK2 349 aa6.88□□□□□ -1.31
ATXN3-240ENST00000556339 TATP17735 454 aaPredicted RBP6.88□□□□□ -1.31
ATXN3-240ENST00000556339 CTBSQ01459 385 aa6.88□□□□□ -1.31
ATXN3-240ENST00000556339 C1orf229Q6ZS94 237 aaPredicted RBP6.88□□□□□ -1.31
ATXN3-240ENST00000556339 ALYREFQ86V81 257 aaKnown RBP6.88□□□□□ -1.31
ATXN3-240ENST00000556339 C1orf216Q8TAB5 229 aa6.88□□□□□ -1.31
ATXN3-240ENST00000556339 PCDHGC4Q9Y5F7 938 aa6.88□□□□□ -1.31
ATXN3-240ENST00000556339 NEURL1BA8MQ27 555 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 ATXN7O15265 892 aaPredicted RBP6.87□□□□□ -1.31
ATXN3-240ENST00000556339 ADAM23O75077 832 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 SOX11P35716 441 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 SCNN1DP51172 638 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 SMTNP53814 917 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 UBAP2LQ14157 1087 aaKnown RBP6.87□□□□□ -1.31
ATXN3-240ENST00000556339 NLRP8Q86W28 1048 aa6.87□□□□□ -1.31
ATXN3-240ENST00000556339 ZCCHC2Q9C0B9 1178 aaKnown RBP6.87□□□□□ -1.31
ATXN3-240ENST00000556339 ABCC8Q09428 1581 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 IFT140Q96RY7 1462 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 C2CD2LO14523 706 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 KHNYNO15037 678 aaKnown RBP6.86□□□□□ -1.31
ATXN3-240ENST00000556339 PROCP04070 461 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 PSME1Q06323 249 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 CYB5RLQ6IPT4 315 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 BICDL1Q6ZP65 573 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 CABP1Q9NZU7 370 aa6.86□□□□□ -1.31
ATXN3-240ENST00000556339 PRDM2Q13029 1718 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 A0A1W2PNR3 127 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 GNB5O14775 395 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 ARAFP10398 606 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 ATP4AP20648 1035 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 EML3Q32P44 896 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 WWC1Q8IX03 1113 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 NDFIP2Q9NV92 336 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 NOP53Q9NZM5 478 aaKnown RBP6.85□□□□□ -1.31
ATXN3-240ENST00000556339 PRR12Q9ULL5 1215 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 TOPBP1Q92547 1522 aa6.85□□□□□ -1.31
ATXN3-240ENST00000556339 KRBA1A5PL33 1030 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 K7ELQ4 463 aaPredicted RBP6.84□□□□□ -1.31
ATXN3-240ENST00000556339 ITGB2P05107 769 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 EPXP11678 715 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 CD33P20138 364 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 ADH6P28332 368 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 CHIC2Q9UKJ5 165 aa6.84□□□□□ -1.31
ATXN3-240ENST00000556339 ZNF608Q9ULD9 1512 aaPredicted RBP6.84□□□□□ -1.31
ATXN3-240ENST00000556339 A6NJY4 79 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 BACH1O14867 736 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 MAPTP10636 758 aaKnown RBP6.83□□□□□ -1.32
ATXN3-240ENST00000556339 SKIP12755 728 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 COL8A1P27658 744 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 BAG6P46379 1132 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 CHMP7Q8WUX9 453 aaPredicted RBP6.83□□□□□ -1.32
ATXN3-240ENST00000556339 BTBD6Q96KE9 485 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 NOD1Q9Y239 953 aa6.83□□□□□ -1.32
ATXN3-240ENST00000556339 AQRO60306 1485 aaKnown RBP eCLIP6.83□□□□□ -1.32
ATXN3-240ENST00000556339 CHSY3Q70JA7 882 aa6.82□□□□□ -1.32
ATXN3-240ENST00000556339 SUV39H2Q9H5I1 410 aa6.82□□□□□ -1.32
ATXN3-240ENST00000556339 NEUROD4Q9HD90 331 aa6.82□□□□□ -1.32
ATXN3-240ENST00000556339 DNAAF2Q9NVR5 837 aaKnown RBP6.82□□□□□ -1.32
ATXN3-240ENST00000556339 ZDHHC3Q9NYG2 299 aa6.82□□□□□ -1.32
ATXN3-240ENST00000556339 SOGA1O94964 1423 aa6.82□□□□□ -1.32
ATXN3-240ENST00000556339 TMEM229AB2RXF0 380 aa6.81□□□□□ -1.32
ATXN3-240ENST00000556339 CDK2AP1O14519 115 aa6.81□□□□□ -1.32
ATXN3-240ENST00000556339 GTF2IP78347 998 aa6.81□□□□□ -1.32
ATXN3-240ENST00000556339 MCM6Q14566 821 aa6.81□□□□□ -1.32
ATXN3-240ENST00000556339 PARP3Q9Y6F1 533 aa6.81□□□□□ -1.32
ATXN3-240ENST00000556339 TDRD9Q8NDG6 1382 aaKnown RBP6.81□□□□□ -1.32
ATXN3-240ENST00000556339 PIK3CDO00329 1044 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 FURINP09958 794 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 DGKGP49619 791 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 PCBP4P57723 403 aaKnown RBP6.8□□□□□ -1.32
ATXN3-240ENST00000556339 TNP2Q05952 138 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 LINC00114Q6XXX2 140 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 DNMBPQ6XZF7 1577 aa6.8□□□□□ -1.32
ATXN3-240ENST00000556339 ZNF232Q9UNY5 417 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms