RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 CCDC192P0DO97 292 aa10.6□□□□□ -0.71
SYNE2-217ENST00000555022 TTC6Q86TZ1 520 aa10.6□□□□□ -0.71
SYNE2-217ENST00000555022 TXNDC2Q86VQ3 553 aa10.6□□□□□ -0.71
SYNE2-217ENST00000555022 ATP10DQ9P241 1426 aa10.6□□□□□ -0.71
SYNE2-217ENST00000555022 GOLGA6L6A8MZA4 724 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 IL13P35225 146 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 CUL4AQ13619 759 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 CACTINQ8WUQ7 758 aaKnown RBP10.59□□□□□ -0.71
SYNE2-217ENST00000555022 FTOQ9C0B1 505 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE2-217ENST00000555022 CBX8Q9HC52 389 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 TMEM51Q9NW97 253 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 CLIP2Q9UDT6 1046 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 TULP4Q9NRJ4 1543 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 GUCY1B3Q02153 619 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 PTH1RQ03431 593 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 LARP1BQ659C4 914 aaKnown RBP10.59□□□□□ -0.71
SYNE2-217ENST00000555022 ISM2Q6H9L7 571 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 FAM184AQ8NB25 1140 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 COG3Q96JB2 828 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 NDUFB9Q9Y6M9 179 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 MAP3K4Q9Y6R4 1608 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 GTF2F1P35269 517 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE2-217ENST00000555022 LRRN4CLQ8ND94 238 aa10.59□□□□□ -0.71
SYNE2-217ENST00000555022 PTCH1Q13635 1447 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 STK31Q9BXU1 1019 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 MED14O60244 1454 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 MAP3K11Q16584 847 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 TAF6LQ9Y6J9 622 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 RIMS2Q9UQ26 1411 aa10.58□□□□□ -0.72
SYNE2-217ENST00000555022 SKIDA1Q1XH10 827 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 EPC1Q9H2F5 836 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 PDRG1Q9NUG6 133 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 SPTLC3Q9NUV7 552 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 MRVI1Q9Y6F6 885 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 QRICH2Q9H0J4 1663 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 ZNF853P0CG23 659 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 STK11IPQ8N1F8 1099 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 PA2G4Q9UQ80 394 aaKnown RBP10.57□□□□□ -0.72
SYNE2-217ENST00000555022 SRGAP3O43295 1099 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 CEP135Q66GS9 1140 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 ZSCAN25Q6NSZ9 544 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 SIL1Q9H173 461 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 PHAXQ9H814 394 aaKnown RBP10.57□□□□□ -0.72
SYNE2-217ENST00000555022 LIMCH1Q9UPQ0 1083 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 MTMR6Q9Y217 621 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 ARHGEF40Q8TER5 1519 aa10.57□□□□□ -0.72
SYNE2-217ENST00000555022 KIF20AO95235 890 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 MCM2P49736 904 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 HSP90AA4PQ58FG1 418 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 C14orf37Q86TY3 774 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 USHBP1Q8N6Y0 703 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 CTNNA3Q9UI47 895 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 KNDC1Q76NI1 1749 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 NR1I2O75469 434 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 CHGBP05060 677 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 ZNF165P49910 485 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 KMT5BQ4FZB7 885 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 PPP1R42Q7Z4L9 355 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 MROH2AA6NES4 1674 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 BIN1O00499 593 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 JAK2O60674 1132 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 UBTFL1P0CB47 393 aaPredicted RBP10.56□□□□□ -0.72
SYNE2-217ENST00000555022 HSP90B1P14625 803 aaKnown RBP10.56□□□□□ -0.72
SYNE2-217ENST00000555022 IRX5P78411 483 aaPredicted RBP10.56□□□□□ -0.72
SYNE2-217ENST00000555022 ME3Q16798 604 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 UVSSAQ2YD98 709 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 SPATA32Q96LK8 384 aa10.56□□□□□ -0.72
SYNE2-217ENST00000555022 GOLGA8FQ08AF8 430 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 GOLGA8DPQ0D2H9 430 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 LMOD3Q0VAK6 560 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 EIF4A2Q14240 407 aaKnown RBP10.55□□□□□ -0.72
SYNE2-217ENST00000555022 FBXO38Q6PIJ6 1188 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 RAB11FIP4Q86YS3 637 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 NEK11Q8NG66 645 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 FAM200AQ8TCP9 573 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 EDC3Q96F86 508 aaKnown RBP10.55□□□□□ -0.72
SYNE2-217ENST00000555022 TRIM34Q9BYJ4 488 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 FLIIQ13045 1269 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 CYB5RLQ6IPT4 315 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 ANKRD7Q92527 254 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 OGFRQ9NZT2 677 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 FAM135BQ49AJ0 1406 aa10.55□□□□□ -0.72
SYNE2-217ENST00000555022 ADGRB2O60241 1585 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 COL3A1P02461 1466 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 GOLGA6L19H0YKK7 550 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 RAB11FIP3O75154 756 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 GYS2P54840 703 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 ERCC6LQ2NKX8 1250 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 LARP1Q6PKG0 1096 aaKnown RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 CCAR2Q8N163 923 aaKnown RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 FAM227BQ96M60 508 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 BECN2A8MW95 431 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 NSD2O96028 1365 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 SBNO2Q9Y2G9 1366 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 SKILP12757 684 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 ZNF75DP51815 510 aa10.54□□□□□ -0.72
SYNE2-217ENST00000555022 C11orf57Q6ZUT1 292 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 INTS4Q96HW7 963 aaKnown RBP10.54□□□□□ -0.72
SYNE2-217ENST00000555022 CCDC8Q9H0W5 538 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms