RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 CD2APQ9Y5K6 639 aa25.53■■□□□ 1.68
PTCH1-227ENST00000553256 KDM3BQ7LBC6 1761 aa25.53■■□□□ 1.68
PTCH1-227ENST00000553256 PRAMEF22A3QJZ6 481 aa25.52■■□□□ 1.68
PTCH1-227ENST00000553256 RFC4P35249 363 aa25.52■■□□□ 1.68
PTCH1-227ENST00000553256 TEX13AQ9BXU3 409 aaPredicted RBP25.52■■□□□ 1.68
PTCH1-227ENST00000553256 MAPK8IP3Q9UPT6 1336 aa25.52■■□□□ 1.68
PTCH1-227ENST00000553256 MMP10P09238 476 aa25.51■■□□□ 1.67
PTCH1-227ENST00000553256 BCL2L12Q9HB09 334 aa25.51■■□□□ 1.67
PTCH1-227ENST00000553256 MIS18AQ9NYP9 233 aa25.51■■□□□ 1.67
PTCH1-227ENST00000553256 USP16Q9Y5T5 823 aa25.51■■□□□ 1.67
PTCH1-227ENST00000553256 COL15A1P39059 1388 aa25.51■■□□□ 1.67
PTCH1-227ENST00000553256 STARD3NLO95772 234 aa25.5■■□□□ 1.67
PTCH1-227ENST00000553256 NEFMP07197 916 aa25.5■■□□□ 1.67
PTCH1-227ENST00000553256 FKBP8Q14318 412 aa25.5■■□□□ 1.67
PTCH1-227ENST00000553256 RUNDC1Q96C34 613 aa25.5■■□□□ 1.67
PTCH1-227ENST00000553256 RIPK4P57078 832 aa25.49■■□□□ 1.67
PTCH1-227ENST00000553256 CCDC146Q8IYE0 955 aa25.49■■□□□ 1.67
PTCH1-227ENST00000553256 NARFQ9UHQ1 456 aa25.49■■□□□ 1.67
PTCH1-227ENST00000553256 TM4SF1P30408 202 aa25.48■■□□□ 1.67
PTCH1-227ENST00000553256 TRIM35Q9UPQ4 493 aa25.48■■□□□ 1.67
PTCH1-227ENST00000553256 KIF13BQ9NQT8 1826 aa25.47■■□□□ 1.67
PTCH1-227ENST00000553256 A1BGP04217 495 aa25.47■■□□□ 1.67
PTCH1-227ENST00000553256 DDR1Q08345 913 aa25.47■■□□□ 1.67
PTCH1-227ENST00000553256 C10orf71Q711Q0 1435 aa25.46■■□□□ 1.67
PTCH1-227ENST00000553256 KIAA1551Q9HCM1 1747 aa25.46■■□□□ 1.67
PTCH1-227ENST00000553256 SNRPA1P09661 255 aaKnown RBP25.46■■□□□ 1.67
PTCH1-227ENST00000553256 CANXP27824 592 aaKnown RBP25.46■■□□□ 1.67
PTCH1-227ENST00000553256 USPL1Q5W0Q7 1092 aa25.46■■□□□ 1.67
PTCH1-227ENST00000553256 PNISRQ8TF01 805 aaKnown RBP25.46■■□□□ 1.67
PTCH1-227ENST00000553256 IL6STP40189 918 aaPredicted RBP25.45■■□□□ 1.66
PTCH1-227ENST00000553256 EIF4A1P60842 406 aaKnown RBP25.45■■□□□ 1.66
PTCH1-227ENST00000553256 WDR43Q15061 677 aaKnown RBP eCLIP25.45■■□□□ 1.66
PTCH1-227ENST00000553256 RRP7AQ9Y3A4 280 aaKnown RBP25.45■■□□□ 1.66
PTCH1-227ENST00000553256 NBPF26B4DH59 902 aa25.43■■□□□ 1.66
PTCH1-227ENST00000553256 NBPF10Q6P3W6 841 aaKnown RBP25.43■■□□□ 1.66
PTCH1-227ENST00000553256 KLHL34Q8N239 644 aa25.43■■□□□ 1.66
PTCH1-227ENST00000553256 NBPF15Q8N660 670 aa25.43■■□□□ 1.66
PTCH1-227ENST00000553256 POLRMTO00411 1230 aaKnown RBP25.42■■□□□ 1.66
PTCH1-227ENST00000553256 GIGYF1O75420 1035 aaPredicted RBP25.42■■□□□ 1.66
PTCH1-227ENST00000553256 BABAM1Q9NWV8 329 aa25.42■■□□□ 1.66
PTCH1-227ENST00000553256 PXDNLA1KZ92 1463 aa25.4■■□□□ 1.66
PTCH1-227ENST00000553256 YBX3P16989 372 aaKnown RBP eCLIP25.4■■□□□ 1.66
PTCH1-227ENST00000553256 SCN7AQ01118 1682 aa25.39■■□□□ 1.66
PTCH1-227ENST00000553256 ZPR1O75312 459 aa25.39■■□□□ 1.66
PTCH1-227ENST00000553256 LMOD3Q0VAK6 560 aa25.39■■□□□ 1.66
PTCH1-227ENST00000553256 NFIXQ14938 502 aa25.39■■□□□ 1.66
PTCH1-227ENST00000553256 NRXN2Q9P2S2 1712 aa25.39■■□□□ 1.65
PTCH1-227ENST00000553256 LAMB4A4D0S4 1761 aa25.39■■□□□ 1.65
PTCH1-227ENST00000553256 A0A087WZG4 1122 aa25.38■■□□□ 1.65
PTCH1-227ENST00000553256 CHL1O00533 1208 aa25.38■■□□□ 1.65
PTCH1-227ENST00000553256 PIP4K2AP48426 406 aaPredicted RBP25.38■■□□□ 1.65
PTCH1-227ENST00000553256 CAMTA2O94983 1202 aa25.37■■□□□ 1.65
PTCH1-227ENST00000553256 TBC1D2BQ9UPU7 963 aa25.36■■□□□ 1.65
PTCH1-227ENST00000553256 PARP3Q9Y6F1 533 aa25.36■■□□□ 1.65
PTCH1-227ENST00000553256 APAF1O14727 1248 aa25.35■■□□□ 1.65
PTCH1-227ENST00000553256 NEUROD2Q15784 382 aa25.35■■□□□ 1.65
PTCH1-227ENST00000553256 BCORQ6W2J9 1755 aa25.34■■□□□ 1.65
PTCH1-227ENST00000553256 KCNA3P22001 575 aa25.34■■□□□ 1.65
PTCH1-227ENST00000553256 TGFB2P61812 414 aa25.34■■□□□ 1.65
PTCH1-227ENST00000553256 LRP10Q7Z4F1 713 aa25.34■■□□□ 1.65
PTCH1-227ENST00000553256 TSPYL4Q9UJ04 414 aa25.34■■□□□ 1.65
PTCH1-227ENST00000553256 ANP32CO43423 234 aa25.33■■□□□ 1.65
PTCH1-227ENST00000553256 ZNF853P0CG23 659 aa25.33■■□□□ 1.65
PTCH1-227ENST00000553256 DCAF8L1A6NGE4 600 aa25.32■■□□□ 1.64
PTCH1-227ENST00000553256 GPR162Q16538 588 aa25.32■■□□□ 1.64
PTCH1-227ENST00000553256 TBC1D9BQ66K14 1250 aa25.32■■□□□ 1.64
PTCH1-227ENST00000553256 AFDNP55196 1824 aaKnown RBP25.32■■□□□ 1.64
PTCH1-227ENST00000553256 RGL2O15211 777 aa25.31■■□□□ 1.64
PTCH1-227ENST00000553256 PDIA6Q15084 440 aa25.3■■□□□ 1.64
PTCH1-227ENST00000553256 DZIP3Q86Y13 1208 aaKnown RBP25.3■■□□□ 1.64
PTCH1-227ENST00000553256 BRCA1P38398 1863 aaKnown RBP25.3■■□□□ 1.64
PTCH1-227ENST00000553256 N4BP2Q86UW6 1770 aaPredicted RBP25.28■■□□□ 1.64
PTCH1-227ENST00000553256 A0A0G2JLW4 131 aa25.28■■□□□ 1.64
PTCH1-227ENST00000553256 SERPINB2P05120 415 aa25.28■■□□□ 1.64
PTCH1-227ENST00000553256 DPEP1P16444 411 aa25.28■■□□□ 1.64
PTCH1-227ENST00000553256 CFAP44Q96MT7 982 aa25.28■■□□□ 1.64
PTCH1-227ENST00000553256 KRT24Q2M2I5 525 aa25.27■■□□□ 1.64
PTCH1-227ENST00000553256 CLEC4GQ6UXB4 293 aa25.27■■□□□ 1.64
PTCH1-227ENST00000553256 MRS2Q9HD23 443 aa25.27■■□□□ 1.64
PTCH1-227ENST00000553256 ZNF330Q9Y3S2 320 aaPredicted RBP25.27■■□□□ 1.64
PTCH1-227ENST00000553256 ERBB4Q15303 1308 aa25.27■■□□□ 1.64
PTCH1-227ENST00000553256 CARMIL3Q8ND23 1372 aa25.27■■□□□ 1.64
PTCH1-227ENST00000553256 GRIN3BO60391 1043 aa25.25■■□□□ 1.63
PTCH1-227ENST00000553256 YY1P25490 414 aa25.25■■□□□ 1.63
PTCH1-227ENST00000553256 NCBP3Q53F19 620 aaKnown RBP25.25■■□□□ 1.63
PTCH1-227ENST00000553256 CCDC27Q2M243 656 aa25.24■■□□□ 1.63
PTCH1-227ENST00000553256 CHD4Q14839 1912 aa25.24■■□□□ 1.63
PTCH1-227ENST00000553256 HLFQ16534 295 aa25.23■■□□□ 1.63
PTCH1-227ENST00000553256 MBIPQ9NS73 344 aa25.23■■□□□ 1.63
PTCH1-227ENST00000553256 PROSER3Q2NL68 480 aa25.22■■□□□ 1.63
PTCH1-227ENST00000553256 PRR5LQ6MZQ0 368 aa25.22■■□□□ 1.63
PTCH1-227ENST00000553256 BICDL1Q6ZP65 573 aa25.22■■□□□ 1.63
PTCH1-227ENST00000553256 TTLL7Q6ZT98 887 aa25.22■■□□□ 1.63
PTCH1-227ENST00000553256 PELP1Q8IZL8 1130 aaKnown RBP25.22■■□□□ 1.63
PTCH1-227ENST00000553256 IFT57Q9NWB7 429 aa25.22■■□□□ 1.63
PTCH1-227ENST00000553256 CHRNA5P30532 468 aa25.21■■□□□ 1.63
PTCH1-227ENST00000553256 ANKRD31Q8N7Z5 1873 aa25.21■■□□□ 1.63
PTCH1-227ENST00000553256 ERVV-1B6SEH8 477 aa25.2■■□□□ 1.62
PTCH1-227ENST00000553256 WWC3Q9ULE0 1092 aa25.2■■□□□ 1.62
PTCH1-227ENST00000553256 HOXB7P09629 217 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms