RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TAF1LQ8IZX4 1826 aa17.83■□□□□ 0.44
PTCH1-213ENST00000546820 PSDA5PKW4 1024 aaPredicted RBP17.82■□□□□ 0.44
PTCH1-213ENST00000546820 HOXB7P09629 217 aa17.82■□□□□ 0.44
PTCH1-213ENST00000546820 SSFA2P28290 1259 aa17.82■□□□□ 0.44
PTCH1-213ENST00000546820 TRAPPC3LQ5T215 181 aa17.82■□□□□ 0.44
PTCH1-213ENST00000546820 INTS5Q6P9B9 1019 aaKnown RBP17.82■□□□□ 0.44
PTCH1-213ENST00000546820 C4BP0C0L5 1744 aa17.81■□□□□ 0.44
PTCH1-213ENST00000546820 SOS1Q07889 1333 aaPredicted RBP17.81■□□□□ 0.44
PTCH1-213ENST00000546820 PRAMEF22A3QJZ6 481 aa17.81■□□□□ 0.44
PTCH1-213ENST00000546820 MSH5O43196 834 aa17.81■□□□□ 0.44
PTCH1-213ENST00000546820 ADRA2BP18089 450 aa17.81■□□□□ 0.44
PTCH1-213ENST00000546820 TSR2Q969E8 191 aaKnown RBP17.81■□□□□ 0.44
PTCH1-213ENST00000546820 A1BGP04217 495 aa17.8■□□□□ 0.44
PTCH1-213ENST00000546820 EIF2S2P20042 333 aaKnown RBP17.8■□□□□ 0.44
PTCH1-213ENST00000546820 CANXP27824 592 aaKnown RBP17.8■□□□□ 0.44
PTCH1-213ENST00000546820 DUSP27Q5VZP5 1158 aa17.8■□□□□ 0.44
PTCH1-213ENST00000546820 A0A087WZG4 1122 aa17.79■□□□□ 0.44
PTCH1-213ENST00000546820 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.79■□□□□ 0.44
PTCH1-213ENST00000546820 PHF14O94880 888 aa17.79■□□□□ 0.44
PTCH1-213ENST00000546820 SLFN5Q08AF3 891 aa17.79■□□□□ 0.44
PTCH1-213ENST00000546820 SLC16A10Q8TF71 515 aa17.79■□□□□ 0.44
PTCH1-213ENST00000546820 CICQ96RK0 1608 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-213ENST00000546820 TJP1Q07157 1748 aa17.78■□□□□ 0.44
PTCH1-213ENST00000546820 FANCIQ9NVI1 1328 aa17.78■□□□□ 0.44
PTCH1-213ENST00000546820 ELL2O00472 640 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-213ENST00000546820 RFC4P35249 363 aa17.78■□□□□ 0.44
PTCH1-213ENST00000546820 IL6STP40189 918 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-213ENST00000546820 KRT24Q2M2I5 525 aa17.78■□□□□ 0.44
PTCH1-213ENST00000546820 SPINK5Q9NQ38 1064 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-213ENST00000546820 ZBTB1Q9Y2K1 713 aa17.78■□□□□ 0.44
PTCH1-213ENST00000546820 COL5A3P25940 1745 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-213ENST00000546820 ERBB4Q15303 1308 aa17.77■□□□□ 0.44
PTCH1-213ENST00000546820 PNPLA7Q6ZV29 1317 aa17.77■□□□□ 0.44
PTCH1-213ENST00000546820 COL23A1Q86Y22 540 aaPredicted RBP17.77■□□□□ 0.44
PTCH1-213ENST00000546820 C8orf58Q8NAV2 365 aa17.77■□□□□ 0.44
PTCH1-213ENST00000546820 ARHGEF1Q92888 912 aaKnown RBP17.77■□□□□ 0.44
PTCH1-213ENST00000546820 TWISTNBQ3B726 338 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-213ENST00000546820 HDGFL1Q5TGJ6 251 aa17.76■□□□□ 0.43
PTCH1-213ENST00000546820 ZNF330Q9Y3S2 320 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-213ENST00000546820 ZPR1O75312 459 aa17.75■□□□□ 0.43
PTCH1-213ENST00000546820 EIF5P55010 431 aaKnown RBP17.75■□□□□ 0.43
PTCH1-213ENST00000546820 EXOSC9Q06265 439 aaKnown RBP17.75■□□□□ 0.43
PTCH1-213ENST00000546820 CCDC30Q5VVM6 783 aa17.75■□□□□ 0.43
PTCH1-213ENST00000546820 NECTIN2Q92692 538 aa17.75■□□□□ 0.43
PTCH1-213ENST00000546820 ARXQ96QS3 562 aa17.75■□□□□ 0.43
PTCH1-213ENST00000546820 MYH14Q7Z406 1995 aaKnown RBP17.75■□□□□ 0.43
PTCH1-213ENST00000546820 ZBED9Q6R2W3 1325 aa17.74■□□□□ 0.43
PTCH1-213ENST00000546820 SMIM5Q71RC9 77 aa17.74■□□□□ 0.43
PTCH1-213ENST00000546820 CDCA7LQ96GN5 454 aa17.74■□□□□ 0.43
PTCH1-213ENST00000546820 DBF4Q9UBU7 674 aaPredicted RBP17.74■□□□□ 0.43
PTCH1-213ENST00000546820 NBPF26B4DH59 902 aa17.73■□□□□ 0.43
PTCH1-213ENST00000546820 MYL6BP14649 208 aa17.73■□□□□ 0.43
PTCH1-213ENST00000546820 NBPF10Q6P3W6 841 aaKnown RBP17.73■□□□□ 0.43
PTCH1-213ENST00000546820 TRMT2AQ8IZ69 625 aaKnown RBP17.73■□□□□ 0.43
PTCH1-213ENST00000546820 NBPF15Q8N660 670 aa17.73■□□□□ 0.43
PTCH1-213ENST00000546820 TSPYL6Q8N831 410 aa17.73■□□□□ 0.43
PTCH1-213ENST00000546820 DDX21Q9NR30 783 aaKnown RBP eCLIP17.73■□□□□ 0.43
PTCH1-213ENST00000546820 QSER1Q2KHR3 1735 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 UBR3Q6ZT12 1888 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 PIP4K2AP48426 406 aaPredicted RBP17.72■□□□□ 0.43
PTCH1-213ENST00000546820 AMIGO3Q86WK7 504 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 STK31Q9BXU1 1019 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 MTFR1LQ9H019 292 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
PTCH1-213ENST00000546820 COL15A1P39059 1388 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 VAMP4O75379 141 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 NLGN1Q8N2Q7 840 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 PDGFDQ9GZP0 370 aaPredicted RBP17.71■□□□□ 0.43
PTCH1-213ENST00000546820 SPON1Q9HCB6 807 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 NARFQ9UHQ1 456 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 LAMB4A4D0S4 1761 aa17.71■□□□□ 0.43
PTCH1-213ENST00000546820 ZBTB7AO95365 584 aa17.7■□□□□ 0.42
PTCH1-213ENST00000546820 PDIA6Q15084 440 aa17.7■□□□□ 0.42
PTCH1-213ENST00000546820 DZIP3Q86Y13 1208 aaKnown RBP17.7■□□□□ 0.42
PTCH1-213ENST00000546820 CHPF2Q9P2E5 772 aa17.7■□□□□ 0.42
PTCH1-213ENST00000546820 TBC1D2BQ9UPU7 963 aa17.7■□□□□ 0.42
PTCH1-213ENST00000546820 KIF6Q6ZMV9 814 aa17.69■□□□□ 0.42
PTCH1-213ENST00000546820 ATF5Q9Y2D1 282 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-213ENST00000546820 USP42Q9H9J4 1324 aaKnown RBP17.69■□□□□ 0.42
PTCH1-213ENST00000546820 CT47B1P0C2W7 299 aaPredicted RBP17.68■□□□□ 0.42
PTCH1-213ENST00000546820 POLD1P28340 1107 aa17.68■□□□□ 0.42
PTCH1-213ENST00000546820 USPL1Q5W0Q7 1092 aa17.68■□□□□ 0.42
PTCH1-213ENST00000546820 ZNF428Q96B54 188 aa17.68■□□□□ 0.42
PTCH1-213ENST00000546820 TUBGCP6Q96RT7 1819 aa17.68■□□□□ 0.42
PTCH1-213ENST00000546820 GYS1P13807 737 aa17.67■□□□□ 0.42
PTCH1-213ENST00000546820 SRP68Q9UHB9 627 aaKnown RBP17.67■□□□□ 0.42
PTCH1-213ENST00000546820 ZNF652Q9Y2D9 606 aa17.67■□□□□ 0.42
PTCH1-213ENST00000546820 ERVV-1B6SEH8 477 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 RGL2O15211 777 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 ANXA1P04083 346 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 SLC4A2P04920 1241 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 AIMP1Q12904 312 aaKnown RBP17.66■□□□□ 0.42
PTCH1-213ENST00000546820 PROSER3Q2NL68 480 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 CLEC4GQ6UXB4 293 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 COPS6Q7L5N1 327 aa17.66■□□□□ 0.42
PTCH1-213ENST00000546820 CAMTA2O94983 1202 aa17.65■□□□□ 0.42
PTCH1-213ENST00000546820 MSL1Q68DK7 614 aa17.65■□□□□ 0.42
PTCH1-213ENST00000546820 XAGE3Q8WTP9 111 aa17.65■□□□□ 0.42
PTCH1-213ENST00000546820 YTHDC1Q96MU7 727 aaKnown RBP17.65■□□□□ 0.42
PTCH1-213ENST00000546820 CASZ1Q86V15 1759 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms