RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PTPRCP08575 1304 aa20.5■□□□□ 0.87
PRPF40A-212ENST00000545856 TRIM37O94972 964 aa20.49■□□□□ 0.87
PRPF40A-212ENST00000545856 RBM42Q9BTD8 480 aaKnown RBP20.49■□□□□ 0.87
PRPF40A-212ENST00000545856 DDX21Q9NR30 783 aaKnown RBP eCLIP20.49■□□□□ 0.87
PRPF40A-212ENST00000545856 HYPKQ9NX55 129 aa20.49■□□□□ 0.87
PRPF40A-212ENST00000545856 N4BP2Q86UW6 1770 aaPredicted RBP20.49■□□□□ 0.87
PRPF40A-212ENST00000545856 MRPL50Q8N5N7 158 aaKnown RBP20.47■□□□□ 0.87
PRPF40A-212ENST00000545856 ATP6V1AP38606 617 aa20.46■□□□□ 0.87
PRPF40A-212ENST00000545856 CNTNAP4Q9C0A0 1308 aa20.46■□□□□ 0.87
PRPF40A-212ENST00000545856 CYP19A1P11511 503 aaPredicted RBP20.46■□□□□ 0.87
PRPF40A-212ENST00000545856 RC3H1Q5TC82 1133 aaKnown RBP20.46■□□□□ 0.87
PRPF40A-212ENST00000545856 USP16Q9Y5T5 823 aa20.46■□□□□ 0.87
PRPF40A-212ENST00000545856 MYH14Q7Z406 1995 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 PXDNLA1KZ92 1463 aa20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 SLC4A2P04920 1241 aa20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 EIF2S2P20042 333 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 RRP1P56182 461 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 DNAJC10Q8IXB1 793 aa20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 SLC4A9Q96Q91 983 aa20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 API5Q9BZZ5 524 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 CCNL1Q9UK58 526 aaPredicted RBP20.45■□□□□ 0.86
PRPF40A-212ENST00000545856 C4BP0C0L5 1744 aa20.44■□□□□ 0.86
PRPF40A-212ENST00000545856 SF3B2Q13435 895 aaKnown RBP20.44■□□□□ 0.86
PRPF40A-212ENST00000545856 ZKSCAN2Q63HK3 967 aa20.44■□□□□ 0.86
PRPF40A-212ENST00000545856 CHPF2Q9P2E5 772 aa20.44■□□□□ 0.86
PRPF40A-212ENST00000545856 IL6STP40189 918 aaPredicted RBP20.43■□□□□ 0.86
PRPF40A-212ENST00000545856 PDE3AQ14432 1141 aa20.43■□□□□ 0.86
PRPF40A-212ENST00000545856 PTF1AQ7RTS3 328 aa20.43■□□□□ 0.86
PRPF40A-212ENST00000545856 IBTKQ9P2D0 1353 aaPredicted RBP20.42■□□□□ 0.86
PRPF40A-212ENST00000545856 RGL2O15211 777 aa20.42■□□□□ 0.86
PRPF40A-212ENST00000545856 BCAR3O75815 825 aa20.42■□□□□ 0.86
PRPF40A-212ENST00000545856 CANXP27824 592 aaKnown RBP20.42■□□□□ 0.86
PRPF40A-212ENST00000545856 PRAMEF22A3QJZ6 481 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 DDX58O95786 925 aaKnown RBP20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 APBA3O96018 575 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 FLIIQ13045 1269 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 PDIA6Q15084 440 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 ATF7IPQ6VMQ6 1270 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 CCDC87Q9NVE4 849 aa20.41■□□□□ 0.86
PRPF40A-212ENST00000545856 QSER1Q2KHR3 1735 aa20.4■□□□□ 0.86
PRPF40A-212ENST00000545856 BAG6P46379 1132 aa20.4■□□□□ 0.86
PRPF40A-212ENST00000545856 SUPT16HQ9Y5B9 1047 aaKnown RBP20.4■□□□□ 0.86
PRPF40A-212ENST00000545856 UBR3Q6ZT12 1888 aa20.39■□□□□ 0.85
PRPF40A-212ENST00000545856 ITPK1Q13572 414 aa20.39■□□□□ 0.85
PRPF40A-212ENST00000545856 NPM2Q86SE8 214 aaKnown RBP20.39■□□□□ 0.85
PRPF40A-212ENST00000545856 NUP188Q5SRE5 1749 aa20.39■□□□□ 0.85
PRPF40A-212ENST00000545856 ARFGEF2Q9Y6D5 1785 aa20.38■□□□□ 0.85
PRPF40A-212ENST00000545856 CRKLP46109 303 aaKnown RBP20.38■□□□□ 0.85
PRPF40A-212ENST00000545856 TXNRD1Q16881 649 aa20.38■□□□□ 0.85
PRPF40A-212ENST00000545856 LRP10Q7Z4F1 713 aa20.38■□□□□ 0.85
PRPF40A-212ENST00000545856 BCL2L13Q9BXK5 485 aa20.38■□□□□ 0.85
PRPF40A-212ENST00000545856 A0A087WZG4 1122 aa20.37■□□□□ 0.85
PRPF40A-212ENST00000545856 ADRA2BP18089 450 aa20.37■□□□□ 0.85
PRPF40A-212ENST00000545856 NOB1Q9ULX3 412 aaKnown RBP20.37■□□□□ 0.85
PRPF40A-212ENST00000545856 BCORQ6W2J9 1755 aa20.37■□□□□ 0.85
PRPF40A-212ENST00000545856 NBPF26B4DH59 902 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 NEFLP07196 543 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 NBPF14Q5TI25 921 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 NBPF10Q6P3W6 841 aaKnown RBP20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 NBPF15Q8N660 670 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 CHMP4BQ9H444 224 aaKnown RBP20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 ABCC4O15439 1325 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 ATP10DQ9P241 1426 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 ANKRD36CQ5JPF3 1778 aa20.36■□□□□ 0.85
PRPF40A-212ENST00000545856 A1BGP04217 495 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 EIF5P55010 431 aaKnown RBP20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 FKBP5Q13451 457 aaPredicted RBP20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 AAMPQ13685 434 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 ERICH6BQ5W0A0 696 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 INTS5Q6P9B9 1019 aaKnown RBP20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 FTSJ3Q8IY81 847 aaKnown RBP20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 LINC00116Q8NCU8 138 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 NECTIN2Q92692 538 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 FRAT1Q92837 279 aaPredicted RBP20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 ZBTB1Q9Y2K1 713 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 SCN7AQ01118 1682 aa20.35■□□□□ 0.85
PRPF40A-212ENST00000545856 TRIM27P14373 513 aa20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 DZIP1LQ8IYY4 767 aaKnown RBP20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 RPS6KA4O75676 772 aa20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 PROSER3Q2NL68 480 aa20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 KSR2Q6VAB6 950 aa20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 CAMKK2Q96RR4 588 aa20.34■□□□□ 0.85
PRPF40A-212ENST00000545856 NUP98P52948 1817 aa20.33■□□□□ 0.84
PRPF40A-212ENST00000545856 COL15A1P39059 1388 aa20.33■□□□□ 0.84
PRPF40A-212ENST00000545856 MYL6BP14649 208 aa20.33■□□□□ 0.84
PRPF40A-212ENST00000545856 PLBD2Q8NHP8 589 aa20.33■□□□□ 0.84
PRPF40A-212ENST00000545856 LRRC4BQ9NT99 713 aa20.33■□□□□ 0.84
PRPF40A-212ENST00000545856 C4AP0C0L4 1744 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 ERVV-1B6SEH8 477 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 TCERG1O14776 1098 aaKnown RBP20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 CCT4P50991 539 aaKnown RBP20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 KIF6Q6ZMV9 814 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 ANKRD13DQ6ZTN6 518 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 COPS6Q7L5N1 327 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 G2E3Q7L622 706 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 FLAD1Q8NFF5 587 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 XAGE3Q8WTP9 111 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 AK7Q96M32 723 aa20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 PHAXQ9H814 394 aaKnown RBP20.32■□□□□ 0.84
PRPF40A-212ENST00000545856 RTCBQ9Y3I0 505 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms