RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 FRMPD1Q5SYB0 1578 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 NLRP1Q9C000 1473 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 FIBPO43427 364 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 TPM3P06753 285 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 USP26Q9BXU7 913 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 KLHL40Q2TBA0 621 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 LARP1Q6PKG0 1096 aaKnown RBP6.9□□□□□ -1.31
VPS50-220ENST00000544910 CHPF2Q9P2E5 772 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 PLEKHG3A1L390 1219 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 FOSBP53539 338 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 AKAP4Q5JQC9 854 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 PHF23Q9BUL5 403 aaPredicted RBP6.9□□□□□ -1.31
VPS50-220ENST00000544910 BABAM1Q9NWV8 329 aa6.9□□□□□ -1.31
VPS50-220ENST00000544910 SYCE3A1L190 88 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 CCDC66A2RUB6 948 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 NOM1Q5C9Z4 860 aaKnown RBP6.89□□□□□ -1.31
VPS50-220ENST00000544910 TTC39AQ5SRH9 613 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 PRPF40BQ6NWY9 871 aaKnown RBP6.89□□□□□ -1.31
VPS50-220ENST00000544910 RBM42Q9BTD8 480 aaKnown RBP6.89□□□□□ -1.31
VPS50-220ENST00000544910 TBX22Q9Y458 520 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 ANAPC15P60006 121 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 ANKRD24Q8TF21 1146 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 EVI5LQ96CN4 794 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 MYD88Q99836 296 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 IFT172Q9UG01 1749 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 BECN2A8MW95 431 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 WASHC4Q2M389 1173 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 RHPN1Q8TCX5 695 aa6.89□□□□□ -1.31
VPS50-220ENST00000544910 ESPNB1AK53 854 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 CPLX1O14810 134 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 PDIA4P13667 645 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 CALRP27797 417 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 ZSCAN23Q3MJ62 389 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 BLOC1S2Q6QNY1 142 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 TMX3Q96JJ7 454 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 SH2B1Q9NRF2 756 aaPredicted RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 TOMM22Q9NS69 142 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 PI4KAP2A4QPH2 592 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 TRDNQ13061 729 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 STK3Q13188 491 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 TRIM29Q14134 588 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 KRT32Q14532 448 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 CCDC73Q6ZRK6 1079 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 G2E3Q7L622 706 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 PI4KAP1Q8N8J0 262 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 CDC42BPGQ6DT37 1551 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 USP6P35125 1406 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 ZC3H6P61129 1189 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 CCDC158Q5M9N0 1113 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 LARP1BQ659C4 914 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 SYNE3Q6ZMZ3 975 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 UBE2Q2Q8WVN8 375 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 UPF3BQ9BZI7 483 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 ARHGEF40Q8TER5 1519 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 ZNF853P0CG23 659 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 XRCC6P12956 609 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS50-220ENST00000544910 CCDC83Q8IWF9 413 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 CCDC34Q96HJ3 373 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 LIMCH1Q9UPQ0 1083 aa6.88□□□□□ -1.31
VPS50-220ENST00000544910 R3HCC1Q9Y3T6 440 aaKnown RBP6.88□□□□□ -1.31
VPS50-220ENST00000544910 APPP05067 770 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 KRT85P78386 507 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 KRT28Q7Z3Y7 464 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 ZNF396Q96N95 335 aaPredicted RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 AOX1Q06278 1338 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 PNPLA6Q8IY17 1366 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 CCDC183Q5T5S1 534 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 RBM33Q96EV2 1170 aaKnown RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 ECHDC1Q9NTX5 307 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 ROBO2Q9HCK4 1378 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 CPSF1Q10570 1443 aaKnown RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 CCDC192P0DO97 292 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 CPLX2Q6PUV4 134 aaKnown RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 RALYLQ86SE5 291 aaKnown RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 OTUD7AQ8TE49 926 aaPredicted RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 IP6K1Q92551 441 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 ALDH1L1O75891 902 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 NFXL1Q6ZNB6 911 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 TOM1L2Q6ZVM7 507 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 GSPT1P15170 499 aaKnown RBP6.87□□□□□ -1.31
VPS50-220ENST00000544910 TAF3Q5VWG9 929 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 ZSCAN30Q86W11 494 aa6.87□□□□□ -1.31
VPS50-220ENST00000544910 RTL1A6NKG5 1358 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 ITSN1Q15811 1721 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 TTC41PQ6P2S7 1318 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 TMEM131LA2VDJ0 1609 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 CCDC8Q9H0W5 538 aaPredicted RBP6.86□□□□□ -1.31
VPS50-220ENST00000544910 BOLA2Q9H3K6 86 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 USP19O94966 1318 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 CHMLP26374 656 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 NAT10Q9H0A0 1025 aaKnown RBP6.86□□□□□ -1.31
VPS50-220ENST00000544910 RBM27Q9P2N5 1060 aaKnown RBP6.86□□□□□ -1.31
VPS50-220ENST00000544910 SHPRHQ149N8 1683 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 GJB2P29033 226 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS50-220ENST00000544910 TNMDQ9H2S6 317 aa6.86□□□□□ -1.31
VPS50-220ENST00000544910 KCNA6P17658 529 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 KSR2Q6VAB6 950 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 NOC3LQ8WTT2 800 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms