RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 CRKLP46109 303 aaKnown RBP18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 DUSP27Q5VZP5 1158 aa18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 EIF2S2P20042 333 aaKnown RBP18.73■□□□□ 0.59
TNFRSF1A-216ENST00000543995 C8orf58Q8NAV2 365 aa18.73■□□□□ 0.59
TNFRSF1A-216ENST00000543995 ANO8Q9HCE9 1232 aaPredicted RBP18.73■□□□□ 0.59
TNFRSF1A-216ENST00000543995 CNTNAP4Q9C0A0 1308 aa18.72■□□□□ 0.59
TNFRSF1A-216ENST00000543995 ZNF827Q17R98 1081 aa18.72■□□□□ 0.59
TNFRSF1A-216ENST00000543995 CCDC87Q9NVE4 849 aa18.72■□□□□ 0.59
TNFRSF1A-216ENST00000543995 TFCP2L1Q9NZI6 479 aa18.72■□□□□ 0.59
TNFRSF1A-216ENST00000543995 MYH14Q7Z406 1995 aaKnown RBP18.72■□□□□ 0.59
TNFRSF1A-216ENST00000543995 GNPATO15228 680 aa18.71■□□□□ 0.59
TNFRSF1A-216ENST00000543995 EXOSC9Q06265 439 aaKnown RBP18.71■□□□□ 0.59
TNFRSF1A-216ENST00000543995 SLC15A2Q16348 729 aa18.71■□□□□ 0.59
TNFRSF1A-216ENST00000543995 RC3H1Q5TC82 1133 aaKnown RBP18.71■□□□□ 0.59
TNFRSF1A-216ENST00000543995 AKT1S1Q96B36 256 aa18.71■□□□□ 0.59
TNFRSF1A-216ENST00000543995 HOXB7P09629 217 aa18.7■□□□□ 0.58
TNFRSF1A-216ENST00000543995 TWISTNBQ3B726 338 aaPredicted RBP18.7■□□□□ 0.58
TNFRSF1A-216ENST00000543995 NECTIN2Q92692 538 aa18.7■□□□□ 0.58
TNFRSF1A-216ENST00000543995 A1BGP04217 495 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 CANXP27824 592 aaKnown RBP18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 HDGFL1Q5TGJ6 251 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 INTS5Q6P9B9 1019 aaKnown RBP18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 TSPYL6Q8N831 410 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 RTCBQ9Y3I0 505 aaKnown RBP18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 UBR3Q6ZT12 1888 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 TUBGCP6Q96RT7 1819 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 PHF14O94880 888 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 ZBTB1Q9Y2K1 713 aa18.69■□□□□ 0.58
TNFRSF1A-216ENST00000543995 SOS1Q07889 1333 aaPredicted RBP18.68■□□□□ 0.58
TNFRSF1A-216ENST00000543995 PIP4K2AP48426 406 aaPredicted RBP18.68■□□□□ 0.58
TNFRSF1A-216ENST00000543995 NPM2Q86SE8 214 aaKnown RBP18.68■□□□□ 0.58
TNFRSF1A-216ENST00000543995 TRMT2AQ8IZ69 625 aaKnown RBP18.68■□□□□ 0.58
TNFRSF1A-216ENST00000543995 ZNF330Q9Y3S2 320 aaPredicted RBP18.68■□□□□ 0.58
TNFRSF1A-216ENST00000543995 RPS6KA4O75676 772 aa18.67■□□□□ 0.58
TNFRSF1A-216ENST00000543995 R3HDM1Q15032 1099 aaKnown RBP18.67■□□□□ 0.58
TNFRSF1A-216ENST00000543995 QSER1Q2KHR3 1735 aa18.66■□□□□ 0.58
TNFRSF1A-216ENST00000543995 CHMP4AQ9BY43 222 aa18.66■□□□□ 0.58
TNFRSF1A-216ENST00000543995 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 PSDA5PKW4 1024 aaPredicted RBP18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 MSH5O43196 834 aa18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 MYL6BP14649 208 aa18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 SSFA2P28290 1259 aa18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 SMIM5Q71RC9 77 aa18.65■□□□□ 0.58
TNFRSF1A-216ENST00000543995 VAMP4O75379 141 aa18.64■□□□□ 0.58
TNFRSF1A-216ENST00000543995 IL6STP40189 918 aaPredicted RBP18.64■□□□□ 0.58
TNFRSF1A-216ENST00000543995 TRAPPC3LQ5T215 181 aa18.64■□□□□ 0.58
TNFRSF1A-216ENST00000543995 CCDC30Q5VVM6 783 aa18.64■□□□□ 0.58
TNFRSF1A-216ENST00000543995 FLAD1Q8NFF5 587 aa18.64■□□□□ 0.58
TNFRSF1A-216ENST00000543995 ERBB4Q15303 1308 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 PNPLA7Q6ZV29 1317 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 NBPF26B4DH59 902 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 NBPF10Q6P3W6 841 aaKnown RBP18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 AMIGO3Q86WK7 504 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 NBPF15Q8N660 670 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 ARXQ96QS3 562 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 CHPF2Q9P2E5 772 aa18.64■□□□□ 0.57
TNFRSF1A-216ENST00000543995 COL15A1P39059 1388 aa18.63■□□□□ 0.57
TNFRSF1A-216ENST00000543995 DBF4Q9UBU7 674 aaPredicted RBP18.63■□□□□ 0.57
TNFRSF1A-216ENST00000543995 TCERG1O14776 1098 aaKnown RBP18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 ANXA1P04083 346 aa18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 ADRA2BP18089 450 aa18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 RFC4P35249 363 aa18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 COL23A1Q86Y22 540 aaPredicted RBP18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 STK31Q9BXU1 1019 aa18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 DDX21Q9NR30 783 aaKnown RBP eCLIP18.62■□□□□ 0.57
TNFRSF1A-216ENST00000543995 A0A087WZG4 1122 aa18.61■□□□□ 0.57
TNFRSF1A-216ENST00000543995 EIF5P55010 431 aaKnown RBP18.61■□□□□ 0.57
TNFRSF1A-216ENST00000543995 PDIA6Q15084 440 aa18.61■□□□□ 0.57
TNFRSF1A-216ENST00000543995 ARHGEF1Q92888 912 aaKnown RBP18.61■□□□□ 0.57
TNFRSF1A-216ENST00000543995 C4AP0C0L4 1744 aa18.61■□□□□ 0.57
TNFRSF1A-216ENST00000543995 PROSER3Q2NL68 480 aa18.6■□□□□ 0.57
TNFRSF1A-216ENST00000543995 ZPR1O75312 459 aa18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 CT47B1P0C2W7 299 aaPredicted RBP18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 DZIP3Q86Y13 1208 aaKnown RBP18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 PDGFDQ9GZP0 370 aaPredicted RBP18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 HYPKQ9NX55 129 aa18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 TBC1D2BQ9UPU7 963 aa18.59■□□□□ 0.57
TNFRSF1A-216ENST00000543995 CACNA1FO60840 1977 aa18.58■□□□□ 0.57
TNFRSF1A-216ENST00000543995 SLC4A2P04920 1241 aa18.58■□□□□ 0.56
TNFRSF1A-216ENST00000543995 AIMP1Q12904 312 aaKnown RBP18.58■□□□□ 0.56
TNFRSF1A-216ENST00000543995 CASZ1Q86V15 1759 aa18.58■□□□□ 0.56
TNFRSF1A-216ENST00000543995 KIF6Q6ZMV9 814 aa18.57■□□□□ 0.56
TNFRSF1A-216ENST00000543995 ZNF428Q96B54 188 aa18.57■□□□□ 0.56
TNFRSF1A-216ENST00000543995 COPS6Q7L5N1 327 aa18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 LRP10Q7Z4F1 713 aa18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 XAGE3Q8WTP9 111 aa18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 SRP68Q9UHB9 627 aaKnown RBP18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 NARFQ9UHQ1 456 aa18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 USP42Q9H9J4 1324 aaKnown RBP18.56■□□□□ 0.56
TNFRSF1A-216ENST00000543995 USPL1Q5W0Q7 1092 aa18.55■□□□□ 0.56
TNFRSF1A-216ENST00000543995 PHAXQ9H814 394 aaKnown RBP18.55■□□□□ 0.56
TNFRSF1A-216ENST00000543995 TTLL7Q6ZT98 887 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 SLC16A10Q8TF71 515 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 BCL2L13Q9BXK5 485 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 BCORQ6W2J9 1755 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 ZBTB7AO95365 584 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 SMC4Q9NTJ3 1288 aa18.54■□□□□ 0.56
TNFRSF1A-216ENST00000543995 SCN7AQ01118 1682 aa18.53■□□□□ 0.56
TNFRSF1A-216ENST00000543995 ALDH1L2Q3SY69 923 aa18.53■□□□□ 0.56
TNFRSF1A-216ENST00000543995 MSL1Q68DK7 614 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms