RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 DBN1Q16643 649 aa12.13□□□□□ -0.47
YBX3-210ENST00000540975 GPR161Q8N6U8 529 aaKnown RBP12.13□□□□□ -0.47
YBX3-210ENST00000540975 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
YBX3-210ENST00000540975 TSPAN10Q9H1Z9 355 aaPredicted RBP12.13□□□□□ -0.47
YBX3-210ENST00000540975 ATG7O95352 703 aa12.12□□□□□ -0.47
YBX3-210ENST00000540975 ELOAQ14241 798 aaKnown RBP12.12□□□□□ -0.47
YBX3-210ENST00000540975 TEAD4Q15561 434 aa12.12□□□□□ -0.47
YBX3-210ENST00000540975 SV2AQ7L0J3 742 aa12.12□□□□□ -0.47
YBX3-210ENST00000540975 TRIM22Q8IYM9 498 aa12.12□□□□□ -0.47
YBX3-210ENST00000540975 NOVA2Q9UNW9 492 aaKnown RBP12.12□□□□□ -0.47
YBX3-210ENST00000540975 PARP3Q9Y6F1 533 aa12.12□□□□□ -0.47
YBX3-210ENST00000540975 ATAD2Q6PL18 1390 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 CDC14CA4D256 554 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 NOS2P35228 1153 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 ZDHHC1Q8WTX9 485 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 L3MBTL2Q969R5 705 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 GMCL1Q96IK5 515 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 GPAMQ9HCL2 828 aa12.11□□□□□ -0.47
YBX3-210ENST00000540975 H7C1W4 665 aa12.1□□□□□ -0.47
YBX3-210ENST00000540975 C21orf2O43822 256 aa12.09□□□□□ -0.47
YBX3-210ENST00000540975 LGR5O75473 907 aa12.09□□□□□ -0.47
YBX3-210ENST00000540975 GMPRP36959 345 aa12.09□□□□□ -0.47
YBX3-210ENST00000540975 ZMIZ1Q9ULJ6 1067 aa12.08□□□□□ -0.48
YBX3-210ENST00000540975 SERTM1A2A2V5 107 aa12.07□□□□□ -0.48
YBX3-210ENST00000540975 GAS2L2Q8NHY3 880 aa12.07□□□□□ -0.48
YBX3-210ENST00000540975 C1orf216Q8TAB5 229 aa12.07□□□□□ -0.48
YBX3-210ENST00000540975 SCG3Q8WXD2 468 aaKnown RBP12.07□□□□□ -0.48
YBX3-210ENST00000540975 ZNF837Q96EG3 531 aaPredicted RBP12.07□□□□□ -0.48
YBX3-210ENST00000540975 RUBCNLQ9H714 662 aa12.07□□□□□ -0.48
YBX3-210ENST00000540975 ZNF232Q9UNY5 417 aa12.07□□□□□ -0.48
YBX3-210ENST00000540975 PPP1R12BO60237 982 aaPredicted RBP12.06□□□□□ -0.48
YBX3-210ENST00000540975 CSB-PGBD3P0DP91 1061 aa12.06□□□□□ -0.48
YBX3-210ENST00000540975 PSMA6P60900 246 aaKnown RBP12.06□□□□□ -0.48
YBX3-210ENST00000540975 NBPF1Q3BBV0 1214 aa12.06□□□□□ -0.48
YBX3-210ENST00000540975 PGBD3Q8N328 593 aa12.06□□□□□ -0.48
YBX3-210ENST00000540975 ZDHHC3Q9NYG2 299 aa12.06□□□□□ -0.48
YBX3-210ENST00000540975 PPP1R15AO75807 674 aaPredicted RBP12.05□□□□□ -0.48
YBX3-210ENST00000540975 THBS1P07996 1170 aa12.05□□□□□ -0.48
YBX3-210ENST00000540975 ATP4AP20648 1035 aa12.05□□□□□ -0.48
YBX3-210ENST00000540975 TXLNAP40222 546 aa12.05□□□□□ -0.48
YBX3-210ENST00000540975 SH3PXD2AQ5TCZ1 1133 aa12.05□□□□□ -0.48
YBX3-210ENST00000540975 NUCKS1Q9H1E3 243 aaKnown RBP12.05□□□□□ -0.48
YBX3-210ENST00000540975 CRISPLD1Q9H336 500 aa12.05□□□□□ -0.48
YBX3-210ENST00000540975 EML1O00423 815 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 WIPF1O43516 503 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 FAM69CQ0P6D2 419 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 POTEAQ6S8J7 498 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 STAG2Q8N3U4 1231 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 STK32AQ8WU08 396 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 GTPBP3Q969Y2 492 aaKnown RBP12.04□□□□□ -0.48
YBX3-210ENST00000540975 ARID3AQ99856 593 aa12.04□□□□□ -0.48
YBX3-210ENST00000540975 ACIN1Q9UKV3 1341 aaKnown RBP12.04□□□□□ -0.48
YBX3-210ENST00000540975 TATP17735 454 aaPredicted RBP12.03□□□□□ -0.48
YBX3-210ENST00000540975 CHMP7Q8WUX9 453 aaPredicted RBP12.03□□□□□ -0.48
YBX3-210ENST00000540975 C7orf43Q8WVR3 580 aa12.03□□□□□ -0.48
YBX3-210ENST00000540975 C2orf49Q9BVC5 232 aaPredicted RBP12.03□□□□□ -0.48
YBX3-210ENST00000540975 CHMP3Q9Y3E7 222 aa12.03□□□□□ -0.48
YBX3-210ENST00000540975 HCN4Q9Y3Q4 1203 aa12.03□□□□□ -0.48
YBX3-210ENST00000540975 IGFBP4P22692 258 aa12.02□□□□□ -0.49
YBX3-210ENST00000540975 WEE1P30291 646 aa12.02□□□□□ -0.49
YBX3-210ENST00000540975 LBRQ14739 615 aaKnown RBP12.02□□□□□ -0.49
YBX3-210ENST00000540975 ARSJQ5FYB0 599 aaPredicted RBP12.02□□□□□ -0.49
YBX3-210ENST00000540975 FOXR1Q6PIV2 292 aa12.02□□□□□ -0.49
YBX3-210ENST00000540975 ZIC5Q96T25 663 aa12.02□□□□□ -0.49
YBX3-210ENST00000540975 COL25A1Q9BXS0 654 aaPredicted RBP12.02□□□□□ -0.49
YBX3-210ENST00000540975 HIRAP54198 1017 aaPredicted RBP12.01□□□□□ -0.49
YBX3-210ENST00000540975 SWI5Q1ZZU3 235 aa12.01□□□□□ -0.49
YBX3-210ENST00000540975 TMEM164Q5U3C3 297 aa12.01□□□□□ -0.49
YBX3-210ENST00000540975 A0A1W2PNR3 127 aa12□□□□□ -0.49
YBX3-210ENST00000540975 GPR25O00155 361 aa12□□□□□ -0.49
YBX3-210ENST00000540975 UBAP2LQ14157 1087 aaKnown RBP12□□□□□ -0.49
YBX3-210ENST00000540975 EFHC2Q5JST6 749 aa12□□□□□ -0.49
YBX3-210ENST00000540975 KRT76Q01546 638 aa11.99□□□□□ -0.49
YBX3-210ENST00000540975 RNFT1Q5M7Z0 435 aa11.99□□□□□ -0.49
YBX3-210ENST00000540975 C1orf53Q5VUE5 145 aa11.99□□□□□ -0.49
YBX3-210ENST00000540975 BICDL1Q6ZP65 573 aa11.99□□□□□ -0.49
YBX3-210ENST00000540975 NLRP8Q86W28 1048 aa11.98□□□□□ -0.49
YBX3-210ENST00000540975 PRIMPOLQ96LW4 560 aa11.98□□□□□ -0.49
YBX3-210ENST00000540975 CNTNAP3BQ96NU0 1288 aa11.98□□□□□ -0.49
YBX3-210ENST00000540975 CNTNAP3Q9BZ76 1288 aa11.98□□□□□ -0.49
YBX3-210ENST00000540975 ZCCHC2Q9C0B9 1178 aaKnown RBP11.98□□□□□ -0.49
YBX3-210ENST00000540975 PHACTR1Q9C0D0 580 aa11.98□□□□□ -0.49
YBX3-210ENST00000540975 TRERF1Q96PN7 1200 aa11.97□□□□□ -0.49
YBX3-210ENST00000540975 GAS6Q14393 721 aa11.96□□□□□ -0.49
YBX3-210ENST00000540975 ALDH16A1Q8IZ83 802 aa11.96□□□□□ -0.49
YBX3-210ENST00000540975 CFHR5Q9BXR6 569 aa11.96□□□□□ -0.49
YBX3-210ENST00000540975 PRMT3O60678 531 aa11.95□□□□□ -0.5
YBX3-210ENST00000540975 FOXO3O43524 673 aa11.94□□□□□ -0.5
YBX3-210ENST00000540975 OCLNQ16625 522 aa11.94□□□□□ -0.5
YBX3-210ENST00000540975 FIGNL1Q6PIW4 674 aa11.94□□□□□ -0.5
YBX3-210ENST00000540975 KLRG1Q96E93 195 aa11.94□□□□□ -0.5
YBX3-210ENST00000540975 PCDHGC4Q9Y5F7 938 aa11.94□□□□□ -0.5
YBX3-210ENST00000540975 GPC6Q9Y625 555 aaPredicted RBP11.94□□□□□ -0.5
YBX3-210ENST00000540975 BNIP3LO60238 219 aa11.93□□□□□ -0.5
YBX3-210ENST00000540975 RHPN1Q8TCX5 695 aa11.93□□□□□ -0.5
YBX3-210ENST00000540975 CLP1Q92989 425 aaKnown RBP11.93□□□□□ -0.5
YBX3-210ENST00000540975 NGLY1Q96IV0 654 aa11.93□□□□□ -0.5
YBX3-210ENST00000540975 NEUROD4Q9HD90 331 aa11.93□□□□□ -0.5
YBX3-210ENST00000540975 NDFIP2Q9NV92 336 aa11.93□□□□□ -0.5
YBX3-210ENST00000540975 GJA3Q9Y6H8 435 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 343.6 ms