RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 SYT17Q9BSW7 474 aa22.27■■□□□ 1.16
CD9-209ENST00000540891 KDM3BQ7LBC6 1761 aa22.27■■□□□ 1.16
CD9-209ENST00000540891 PRAMEF22A3QJZ6 481 aa22.26■■□□□ 1.15
CD9-209ENST00000540891 TRIM35Q9UPQ4 493 aa22.26■■□□□ 1.15
CD9-209ENST00000540891 STARD3NLO95772 234 aa22.25■■□□□ 1.15
CD9-209ENST00000540891 GYS1P13807 737 aa22.25■■□□□ 1.15
CD9-209ENST00000540891 RFC4P35249 363 aa22.25■■□□□ 1.15
CD9-209ENST00000540891 NEUROD2Q15784 382 aa22.25■■□□□ 1.15
CD9-209ENST00000540891 TEX13AQ9BXU3 409 aaPredicted RBP22.25■■□□□ 1.15
CD9-209ENST00000540891 LMOD3Q0VAK6 560 aa22.24■■□□□ 1.15
CD9-209ENST00000540891 PNISRQ8TF01 805 aaKnown RBP22.24■■□□□ 1.15
CD9-209ENST00000540891 SRP68Q9UHB9 627 aaKnown RBP22.24■■□□□ 1.15
CD9-209ENST00000540891 USP16Q9Y5T5 823 aa22.24■■□□□ 1.15
CD9-209ENST00000540891 USP42Q9H9J4 1324 aaKnown RBP22.24■■□□□ 1.15
CD9-209ENST00000540891 MRS2Q9HD23 443 aa22.23■■□□□ 1.15
CD9-209ENST00000540891 COL15A1P39059 1388 aa22.23■■□□□ 1.15
CD9-209ENST00000540891 SNRPA1P09661 255 aaKnown RBP22.22■■□□□ 1.15
CD9-209ENST00000540891 CANXP27824 592 aaKnown RBP22.22■■□□□ 1.15
CD9-209ENST00000540891 APAF1O14727 1248 aa22.21■■□□□ 1.15
CD9-209ENST00000540891 A1BGP04217 495 aa22.21■■□□□ 1.15
CD9-209ENST00000540891 EIF5P55010 431 aaKnown RBP22.21■■□□□ 1.15
CD9-209ENST00000540891 EIF4A1P60842 406 aaKnown RBP22.21■■□□□ 1.15
CD9-209ENST00000540891 NLGN1Q8N2Q7 840 aa22.2■■□□□ 1.14
CD9-209ENST00000540891 MMP10P09238 476 aa22.19■■□□□ 1.14
CD9-209ENST00000540891 KLHL34Q8N239 644 aa22.19■■□□□ 1.14
CD9-209ENST00000540891 FKBP8Q14318 412 aa22.18■■□□□ 1.14
CD9-209ENST00000540891 USPL1Q5W0Q7 1092 aa22.18■■□□□ 1.14
CD9-209ENST00000540891 NLGN2Q8NFZ4 835 aa22.18■■□□□ 1.14
CD9-209ENST00000540891 NARFQ9UHQ1 456 aa22.18■■□□□ 1.14
CD9-209ENST00000540891 GIGYF1O75420 1035 aaPredicted RBP22.17■■□□□ 1.14
CD9-209ENST00000540891 IL6STP40189 918 aaPredicted RBP22.17■■□□□ 1.14
CD9-209ENST00000540891 BABAM1Q9NWV8 329 aa22.17■■□□□ 1.14
CD9-209ENST00000540891 TSPYL4Q9UJ04 414 aa22.17■■□□□ 1.14
CD9-209ENST00000540891 PIP4K2AP48426 406 aaPredicted RBP22.16■■□□□ 1.14
CD9-209ENST00000540891 BCL2L12Q9HB09 334 aa22.16■■□□□ 1.14
CD9-209ENST00000540891 LAMB4A4D0S4 1761 aa22.16■■□□□ 1.14
CD9-209ENST00000540891 NBPF26B4DH59 902 aa22.15■■□□□ 1.14
CD9-209ENST00000540891 ZPR1O75312 459 aa22.15■■□□□ 1.14
CD9-209ENST00000540891 NBPF10Q6P3W6 841 aaKnown RBP22.15■■□□□ 1.14
CD9-209ENST00000540891 NBPF15Q8N660 670 aa22.15■■□□□ 1.14
CD9-209ENST00000540891 CHL1O00533 1208 aa22.14■■□□□ 1.13
CD9-209ENST00000540891 CD2APQ9Y5K6 639 aa22.14■■□□□ 1.13
CD9-209ENST00000540891 TM4SF1P30408 202 aa22.13■■□□□ 1.13
CD9-209ENST00000540891 DDR1Q08345 913 aa22.13■■□□□ 1.13
CD9-209ENST00000540891 A0A087WZG4 1122 aa22.12■■□□□ 1.13
CD9-209ENST00000540891 TBC1D2BQ9UPU7 963 aa22.12■■□□□ 1.13
CD9-209ENST00000540891 ZNF330Q9Y3S2 320 aaPredicted RBP22.12■■□□□ 1.13
CD9-209ENST00000540891 SCN7AQ01118 1682 aa22.11■■□□□ 1.13
CD9-209ENST00000540891 SENP3-EIF4A1A0A087X0R7 540 aa22.1■■□□□ 1.13
CD9-209ENST00000540891 C10orf71Q711Q0 1435 aa22.1■■□□□ 1.13
CD9-209ENST00000540891 LAS1LQ9Y4W2 734 aaKnown RBP22.1■■□□□ 1.13
CD9-209ENST00000540891 POLRMTO00411 1230 aaKnown RBP22.09■■□□□ 1.13
CD9-209ENST00000540891 CAMTA2O94983 1202 aa22.09■■□□□ 1.13
CD9-209ENST00000540891 ZNF853P0CG23 659 aa22.09■■□□□ 1.13
CD9-209ENST00000540891 NFIXQ14938 502 aa22.09■■□□□ 1.13
CD9-209ENST00000540891 CFAP44Q96MT7 982 aa22.09■■□□□ 1.13
CD9-209ENST00000540891 PARP3Q9Y6F1 533 aa22.09■■□□□ 1.13
CD9-209ENST00000540891 KIF13BQ9NQT8 1826 aa22.08■■□□□ 1.13
CD9-209ENST00000540891 KRT24Q2M2I5 525 aa22.08■■□□□ 1.13
CD9-209ENST00000540891 DZIP3Q86Y13 1208 aaKnown RBP22.07■■□□□ 1.12
CD9-209ENST00000540891 BCORQ6W2J9 1755 aa22.07■■□□□ 1.12
CD9-209ENST00000540891 KIAA1551Q9HCM1 1747 aa22.06■■□□□ 1.12
CD9-209ENST00000540891 CCDC27Q2M243 656 aa22.06■■□□□ 1.12
CD9-209ENST00000540891 MBIPQ9NS73 344 aa22.06■■□□□ 1.12
CD9-209ENST00000540891 TBC1D9BQ66K14 1250 aa22.05■■□□□ 1.12
CD9-209ENST00000540891 NPM2Q86SE8 214 aaKnown RBP22.05■■□□□ 1.12
CD9-209ENST00000540891 IFT57Q9NWB7 429 aa22.05■■□□□ 1.12
CD9-209ENST00000540891 PXDNLA1KZ92 1463 aa22.04■■□□□ 1.12
CD9-209ENST00000540891 NRXN2Q9P2S2 1712 aa22.04■■□□□ 1.12
CD9-209ENST00000540891 FAM9BQ8IZU0 186 aa22.04■■□□□ 1.12
CD9-209ENST00000540891 ERBB4Q15303 1308 aa22.04■■□□□ 1.12
CD9-209ENST00000540891 DCAF8L1A6NGE4 600 aa22.03■■□□□ 1.12
CD9-209ENST00000540891 EIF2S2P20042 333 aaKnown RBP22.03■■□□□ 1.12
CD9-209ENST00000540891 CALD1Q05682 793 aaKnown RBP22.03■■□□□ 1.12
CD9-209ENST00000540891 PDIA6Q15084 440 aa22.03■■□□□ 1.12
CD9-209ENST00000540891 NCBP3Q53F19 620 aaKnown RBP22.03■■□□□ 1.12
CD9-209ENST00000540891 BICDL1Q6ZP65 573 aa22.03■■□□□ 1.12
CD9-209ENST00000540891 LRP10Q7Z4F1 713 aa22.03■■□□□ 1.12
CD9-209ENST00000540891 WWC1Q8IX03 1113 aa22.03■■□□□ 1.12
CD9-209ENST00000540891 AFDNP55196 1824 aaKnown RBP22.02■■□□□ 1.12
CD9-209ENST00000540891 SERPINB2P05120 415 aa22.02■■□□□ 1.12
CD9-209ENST00000540891 YBX3P16989 372 aaKnown RBP eCLIP22.02■■□□□ 1.12
CD9-209ENST00000540891 MYL6BP14649 208 aa22.01■■□□□ 1.11
CD9-209ENST00000540891 TGFB2P61812 414 aa22.01■■□□□ 1.11
CD9-209ENST00000540891 GNAI1P63096 354 aa22.01■■□□□ 1.11
CD9-209ENST00000540891 NGEFQ8N5V2 710 aa22.01■■□□□ 1.11
CD9-209ENST00000540891 UTRNP46939 3433 aa22■■□□□ 1.11
CD9-209ENST00000540891 GPR162Q16538 588 aa22■■□□□ 1.11
CD9-209ENST00000540891 PROSER3Q2NL68 480 aa22■■□□□ 1.11
CD9-209ENST00000540891 HLFQ16534 295 aa21.99■■□□□ 1.11
CD9-209ENST00000540891 CLEC4GQ6UXB4 293 aa21.99■■□□□ 1.11
CD9-209ENST00000540891 TTLL7Q6ZT98 887 aa21.99■■□□□ 1.11
CD9-209ENST00000540891 PELP1Q8IZL8 1130 aaKnown RBP21.99■■□□□ 1.11
CD9-209ENST00000540891 NECTIN2Q92692 538 aa21.99■■□□□ 1.11
CD9-209ENST00000540891 WWC3Q9ULE0 1092 aa21.99■■□□□ 1.11
CD9-209ENST00000540891 GOLGB1Q14789 3259 aaKnown RBP21.99■■□□□ 1.11
CD9-209ENST00000540891 N4BP2Q86UW6 1770 aaPredicted RBP21.99■■□□□ 1.11
CD9-209ENST00000540891 A0A0G2JLW4 131 aa21.98■■□□□ 1.11
CD9-209ENST00000540891 RGL2O15211 777 aa21.98■■□□□ 1.11
CD9-209ENST00000540891 ANXA1P04083 346 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms