RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NRXN1Q9ULB1 1477 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 ANKRD36BQ8N2N9 1353 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 MAGEA9P43362 315 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 HDGFP51858 240 aaKnown RBP11.29□□□□□ -0.6
CLIP1-214ENST00000540539 RPAINQ86UA6 219 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 ANKRD20A12PQ8NF67 263 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 SMARCE1Q969G3 411 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 RWDD1Q9H446 243 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-214ENST00000540539 FHOD1Q9Y613 1164 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 SSR1P43307 286 aaKnown RBP11.29□□□□□ -0.6
CLIP1-214ENST00000540539 ELF2Q15723 593 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 C11orf91Q3C1V1 193 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 NBPF6Q5VWK0 638 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 NBPF5PQ86XG9 351 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-214ENST00000540539 JMYQ8N9B5 988 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 NBPF4Q96M43 638 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 ZNF215Q9UL58 517 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-214ENST00000540539 PAXBP1Q9Y5B6 917 aa11.29□□□□□ -0.6
CLIP1-214ENST00000540539 SLIT1O75093 1534 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 PLA2G4AP47712 749 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 TERF2IPQ9NYB0 399 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 ARHGAP23Q9P227 1491 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 TRPM1Q7Z4N2 1603 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 KLHL33A6NCF5 533 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 PIK3C2GO75747 1445 aa11.28□□□□□ -0.6
CLIP1-214ENST00000540539 ZKSCAN8Q15776 578 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-214ENST00000540539 NOM1Q5C9Z4 860 aaKnown RBP11.28□□□□□ -0.6
CLIP1-214ENST00000540539 POLR3GO15318 223 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-214ENST00000540539 LTKP29376 864 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 TXNDC2Q86VQ3 553 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 FBXO18Q8NFZ0 1043 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 BSDC1Q9NW68 430 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-214ENST00000540539 EXOC6BQ9Y2D4 811 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 EID1Q9Y6B2 187 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 RALGAPBQ86X10 1494 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 ERBB3P21860 1342 aa11.27□□□□□ -0.6
CLIP1-214ENST00000540539 WDR43Q15061 677 aaKnown RBP eCLIP11.27□□□□□ -0.61
CLIP1-214ENST00000540539 OTUD6BQ8N6M0 293 aa11.27□□□□□ -0.61
CLIP1-214ENST00000540539 ZNF526Q8TF50 670 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-214ENST00000540539 ZDHHC9Q9Y397 364 aa11.27□□□□□ -0.61
CLIP1-214ENST00000540539 TPM3P06753 285 aa11.26□□□□□ -0.61
CLIP1-214ENST00000540539 INHBEP58166 350 aa11.26□□□□□ -0.61
CLIP1-214ENST00000540539 PNMA6AP0CW24 399 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-214ENST00000540539 CFAP70Q5T0N1 1121 aa11.26□□□□□ -0.61
CLIP1-214ENST00000540539 GOLGA5Q8TBA6 731 aa11.26□□□□□ -0.61
CLIP1-214ENST00000540539 KIAA1210Q9ULL0 1709 aa11.26□□□□□ -0.61
CLIP1-214ENST00000540539 PER1O15534 1290 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-214ENST00000540539 KDM4AO75164 1064 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 RLBP1P12271 317 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 TRDNQ13061 729 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 CEP89Q96ST8 783 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 CCDC196A0A1B0GTZ2 297 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 KIF3CO14782 793 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 SETQ01105 290 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-214ENST00000540539 SPC24Q8NBT2 197 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 ITFG2Q969R8 447 aa11.25□□□□□ -0.61
CLIP1-214ENST00000540539 C14orf93Q9H972 538 aaKnown RBP11.25□□□□□ -0.61
CLIP1-214ENST00000540539 ATF5Q9Y2D1 282 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-214ENST00000540539 SCAF11Q99590 1463 aaKnown RBP11.25□□□□□ -0.61
CLIP1-214ENST00000540539 MPHOSPH10O00566 681 aaKnown RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 HCLS1P14317 486 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 H2AFXP16104 143 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 TPM4P67936 248 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 GPS2Q13227 327 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 MMS22LQ6ZRQ5 1243 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 SYAP1Q96A49 352 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 AP5Z1O43299 807 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 CALRP27797 417 aaKnown RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 ZC3H12AQ5D1E8 599 aaKnown RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 ANKLE2Q86XL3 938 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 ZNF513Q8N8E2 541 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-214ENST00000540539 CARD11Q9BXL7 1154 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 TNNQ9UQP3 1299 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 KNSTRNQ9Y448 316 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 LMTK3Q96Q04 1460 aa11.24□□□□□ -0.61
CLIP1-214ENST00000540539 ARID4AP29374 1257 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-214ENST00000540539 TMEM132AQ24JP5 1023 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 PRDM16Q9HAZ2 1276 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 LAMC1P11047 1609 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 GPRASP1Q5JY77 1395 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 PLEKHG1Q9ULL1 1385 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 ST20-MTHFSA0A0A6YYL1 179 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 PTGS1P23219 599 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 IQUBQ8NA54 791 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 PPM1EQ8WY54 764 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 ERO1AQ96HE7 468 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 IFT57Q9NWB7 429 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 IQGAP1P46940 1657 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 ALKQ9UM73 1620 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 NRXN3Q9Y4C0 1643 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 EIF3CLB5ME19 914 aaKnown RBP11.23□□□□□ -0.61
CLIP1-214ENST00000540539 SCP2P22307 547 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 RABEP1Q15276 862 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 PSMD1Q99460 953 aa11.23□□□□□ -0.61
CLIP1-214ENST00000540539 EIF3CQ99613 913 aaKnown RBP11.23□□□□□ -0.61
CLIP1-214ENST00000540539 SETBP1Q9Y6X0 1596 aa11.22□□□□□ -0.61
CLIP1-214ENST00000540539 CLCN6P51797 869 aa11.22□□□□□ -0.61
CLIP1-214ENST00000540539 HSPA2P54652 639 aa11.22□□□□□ -0.61
CLIP1-214ENST00000540539 TBC1D22AQ8WUA7 517 aa11.22□□□□□ -0.61
CLIP1-214ENST00000540539 HTATSF1O43719 755 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms