RNA–Protein interactions for RNA: ENST00000531243.2

PABPC4-225, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 4

Gene PABPC4, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-225	ENST00000531243	FANCI	Q9NVI1	1328 aa		27.56	■■■□□ 2
PABPC4-225	ENST00000531243	MYH14	Q7Z406	1995 aa	Known RBP	27.55	■■■□□ 2
PABPC4-225	ENST00000531243	CRKL	P46109	303 aa	Known RBP	27.55	■■■□□ 2
PABPC4-225	ENST00000531243	FLAD1	Q8NFF5	587 aa		27.55	■■■□□ 2
PABPC4-225	ENST00000531243	CCDC87	Q9NVE4	849 aa		27.55	■■■□□ 2
PABPC4-225	ENST00000531243	UBR3	Q6ZT12	1888 aa		27.55	■■■□□ 2
PABPC4-225	ENST00000531243	NPM2	Q86SE8	214 aa	Known RBP	27.54	■■■□□ 2
PABPC4-225	ENST00000531243	USP16	Q9Y5T5	823 aa		27.54	■■■□□ 2
PABPC4-225	ENST00000531243	SLFN5	Q08AF3	891 aa		27.53	■■■□□ 2
PABPC4-225	ENST00000531243	RTCB	Q9Y3I0	505 aa	Known RBP	27.53	■■■□□ 2
PABPC4-225	ENST00000531243	GNPAT	O15228	680 aa		27.52	■■■□□ 2
PABPC4-225	ENST00000531243	DUSP27	Q5VZP5	1158 aa		27.52	■■■□□ 2
PABPC4-225	ENST00000531243	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.52	■■■□□ 2
PABPC4-225	ENST00000531243	TUBGCP6	Q96RT7	1819 aa		27.51	■■□□□ 1.99
PABPC4-225	ENST00000531243	ZNF827	Q17R98	1081 aa		27.51	■■□□□ 1.99
PABPC4-225	ENST00000531243	SPINK5	Q9NQ38	1064 aa	Predicted RBP	27.51	■■□□□ 1.99
PABPC4-225	ENST00000531243	ERBB4	Q15303	1308 aa		27.5	■■□□□ 1.99
PABPC4-225	ENST00000531243	PRAMEF22	A3QJZ6	481 aa		27.5	■■□□□ 1.99
PABPC4-225	ENST00000531243	RPS6KA4	O75676	772 aa		27.5	■■□□□ 1.99
PABPC4-225	ENST00000531243	SSFA2	P28290	1259 aa		27.5	■■□□□ 1.99
PABPC4-225	ENST00000531243	EIF2S2	P20042	333 aa	Known RBP	27.49	■■□□□ 1.99
PABPC4-225	ENST00000531243	ADRA2B	P18089	450 aa		27.48	■■□□□ 1.99
PABPC4-225	ENST00000531243	TWISTNB	Q3B726	338 aa	Predicted RBP	27.48	■■□□□ 1.99
PABPC4-225	ENST00000531243	INTS5	Q6P9B9	1019 aa	Known RBP	27.48	■■□□□ 1.99
PABPC4-225	ENST00000531243	ELL2	O00472	640 aa	Predicted RBP	27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	CANX	P27824	592 aa	Known RBP	27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	KRT24	Q2M2I5	525 aa		27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	TRAPPC3L	Q5T215	181 aa		27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	HDGFL1	Q5TGJ6	251 aa		27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	ZBTB1	Q9Y2K1	713 aa		27.47	■■□□□ 1.99
PABPC4-225	ENST00000531243	CACNA1F	O60840	1977 aa		27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	A1BG	P04217	495 aa		27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	IL6ST	P40189	918 aa	Predicted RBP	27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	EXOSC9	Q06265	439 aa	Known RBP	27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	R3HDM1	Q15032	1099 aa	Known RBP	27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	C8orf58	Q8NAV2	365 aa		27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243	CDCA7L	Q96GN5	454 aa		27.46	■■□□□ 1.99
PABPC4-225	ENST00000531243		A0A087WZG4	1122 aa		27.45	■■□□□ 1.98
PABPC4-225	ENST00000531243	PHF14	O94880	888 aa		27.44	■■□□□ 1.98
PABPC4-225	ENST00000531243	CCDC30	Q5VVM6	783 aa		27.44	■■□□□ 1.98
PABPC4-225	ENST00000531243	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.43	■■□□□ 1.98
PABPC4-225	ENST00000531243	MSH5	O43196	834 aa		27.43	■■□□□ 1.98
PABPC4-225	ENST00000531243	TRMT2A	Q8IZ69	625 aa	Known RBP	27.43	■■□□□ 1.98
PABPC4-225	ENST00000531243	PNPLA7	Q6ZV29	1317 aa		27.42	■■□□□ 1.98
PABPC4-225	ENST00000531243	RFC4	P35249	363 aa		27.42	■■□□□ 1.98
PABPC4-225	ENST00000531243	YTHDC1	Q96MU7	727 aa	Known RBP	27.42	■■□□□ 1.98
PABPC4-225	ENST00000531243	DBF4	Q9UBU7	674 aa	Predicted RBP	27.42	■■□□□ 1.98
PABPC4-225	ENST00000531243	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.42	■■□□□ 1.98
PABPC4-225	ENST00000531243	COL15A1	P39059	1388 aa		27.41	■■□□□ 1.98
PABPC4-225	ENST00000531243	TSPYL6	Q8N831	410 aa		27.41	■■□□□ 1.98
PABPC4-225	ENST00000531243	STK31	Q9BXU1	1019 aa		27.41	■■□□□ 1.98
PABPC4-225	ENST00000531243	PSD	A5PKW4	1024 aa	Predicted RBP	27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	CT47B1	P0C2W7	299 aa	Predicted RBP	27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	EIF5	P55010	431 aa	Known RBP	27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	SLC16A10	Q8TF71	515 aa		27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	NECTIN2	Q92692	538 aa		27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	C4A	P0C0L4	1744 aa		27.4	■■□□□ 1.98
PABPC4-225	ENST00000531243	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.39	■■□□□ 1.98
PABPC4-225	ENST00000531243	VAMP4	O75379	141 aa		27.38	■■□□□ 1.97
PABPC4-225	ENST00000531243	MYL6B	P14649	208 aa		27.38	■■□□□ 1.97
PABPC4-225	ENST00000531243	COL23A1	Q86Y22	540 aa	Predicted RBP	27.38	■■□□□ 1.97
PABPC4-225	ENST00000531243	ARHGEF1	Q92888	912 aa	Known RBP	27.38	■■□□□ 1.97
PABPC4-225	ENST00000531243	ZNF428	Q96B54	188 aa		27.38	■■□□□ 1.97
PABPC4-225	ENST00000531243	CASZ1	Q86V15	1759 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	NBPF26	B4DH59	902 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	ZPR1	O75312	459 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	NBPF10	Q6P3W6	841 aa	Known RBP	27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	NBPF15	Q8N660	670 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	ARX	Q96QS3	562 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	HYPK	Q9NX55	129 aa		27.37	■■□□□ 1.97
PABPC4-225	ENST00000531243	PIP4K2A	P48426	406 aa	Predicted RBP	27.36	■■□□□ 1.97
PABPC4-225	ENST00000531243	CHPF2	Q9P2E5	772 aa		27.36	■■□□□ 1.97
PABPC4-225	ENST00000531243	DZIP3	Q86Y13	1208 aa	Known RBP	27.34	■■□□□ 1.97
PABPC4-225	ENST00000531243	PDIA6	Q15084	440 aa		27.33	■■□□□ 1.97
PABPC4-225	ENST00000531243	KIF6	Q6ZMV9	814 aa		27.33	■■□□□ 1.97
PABPC4-225	ENST00000531243	NARF	Q9UHQ1	456 aa		27.33	■■□□□ 1.97
PABPC4-225	ENST00000531243	AMIGO3	Q86WK7	504 aa		27.32	■■□□□ 1.96
PABPC4-225	ENST00000531243	USP42	Q9H9J4	1324 aa	Known RBP	27.31	■■□□□ 1.96
PABPC4-225	ENST00000531243	BCOR	Q6W2J9	1755 aa		27.3	■■□□□ 1.96
PABPC4-225	ENST00000531243	SMIM5	Q71RC9	77 aa		27.3	■■□□□ 1.96
PABPC4-225	ENST00000531243	MTFR1L	Q9H019	292 aa		27.3	■■□□□ 1.96
PABPC4-225	ENST00000531243	TBC1D2B	Q9UPU7	963 aa		27.3	■■□□□ 1.96
PABPC4-225	ENST00000531243	ZNF652	Q9Y2D9	606 aa		27.3	■■□□□ 1.96
PABPC4-225	ENST00000531243	RGL2	O15211	777 aa		27.29	■■□□□ 1.96
PABPC4-225	ENST00000531243	SLC4A2	P04920	1241 aa		27.29	■■□□□ 1.96
PABPC4-225	ENST00000531243	NLGN1	Q8N2Q7	840 aa		27.29	■■□□□ 1.96
PABPC4-225	ENST00000531243	SCN7A	Q01118	1682 aa		27.29	■■□□□ 1.96
PABPC4-225	ENST00000531243	ANXA1	P04083	346 aa		27.28	■■□□□ 1.96
PABPC4-225	ENST00000531243	PROSER3	Q2NL68	480 aa		27.28	■■□□□ 1.96
PABPC4-225	ENST00000531243	USPL1	Q5W0Q7	1092 aa		27.28	■■□□□ 1.96
PABPC4-225	ENST00000531243	DDX58	O95786	925 aa	Known RBP	27.27	■■□□□ 1.96
PABPC4-225	ENST00000531243	AIMP1	Q12904	312 aa	Known RBP	27.27	■■□□□ 1.96
PABPC4-225	ENST00000531243	ALDH1L2	Q3SY69	923 aa		27.27	■■□□□ 1.96
PABPC4-225	ENST00000531243	COPS6	Q7L5N1	327 aa		27.27	■■□□□ 1.96
PABPC4-225	ENST00000531243	NUP98	P52948	1817 aa		27.27	■■□□□ 1.96
PABPC4-225	ENST00000531243	ERVV-1	B6SEH8	477 aa		27.26	■■□□□ 1.95
PABPC4-225	ENST00000531243	CLEC4G	Q6UXB4	293 aa		27.26	■■□□□ 1.95
PABPC4-225	ENST00000531243	LRP10	Q7Z4F1	713 aa		27.26	■■□□□ 1.95
PABPC4-225	ENST00000531243	XAGE3	Q8WTP9	111 aa		27.26	■■□□□ 1.95
PABPC4-225	ENST00000531243	MAP3K15	Q6ZN16	1313 aa		27.25	■■□□□ 1.95

Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms