RNA–Protein interactions for RNA: ENST00000530618.1

SSBP3-213, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-213ENST00000530618 TNRC6CQ9HCJ0 1690 aaKnown RBP6.33□□□□□ -1.4
SSBP3-213ENST00000530618 FER1L6Q2WGJ9 1857 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 ERVV-2B6SEH9 535 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 U2SURPO15042 1029 aaKnown RBP6.32□□□□□ -1.4
SSBP3-213ENST00000530618 MMP10P09238 476 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 IL13P35225 146 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 ATP6V1AP38606 617 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 ARHGEF1Q92888 912 aaKnown RBP6.32□□□□□ -1.4
SSBP3-213ENST00000530618 WWC3Q9ULE0 1092 aa6.32□□□□□ -1.4
SSBP3-213ENST00000530618 RPS6KA4O75676 772 aa6.31□□□□□ -1.4
SSBP3-213ENST00000530618 U2AF1L5P0DN76 240 aaPredicted RBP6.31□□□□□ -1.4
SSBP3-213ENST00000530618 U2AF1Q01081 240 aaKnown RBP eCLIP6.31□□□□□ -1.4
SSBP3-213ENST00000530618 DDR1Q08345 913 aa6.31□□□□□ -1.4
SSBP3-213ENST00000530618 INTS5Q6P9B9 1019 aaKnown RBP6.31□□□□□ -1.4
SSBP3-213ENST00000530618 DCAF5Q96JK2 942 aa6.31□□□□□ -1.4
SSBP3-213ENST00000530618 DLG5Q8TDM6 1919 aa6.31□□□□□ -1.4
SSBP3-213ENST00000530618 USP42Q9H9J4 1324 aaKnown RBP6.3□□□□□ -1.4
SSBP3-213ENST00000530618 LMOD3Q0VAK6 560 aa6.3□□□□□ -1.4
SSBP3-213ENST00000530618 ZNF530Q6P9A1 599 aaPredicted RBP6.3□□□□□ -1.4
SSBP3-213ENST00000530618 NGEFQ8N5V2 710 aa6.3□□□□□ -1.4
SSBP3-213ENST00000530618 SRP68Q9UHB9 627 aaKnown RBP6.3□□□□□ -1.4
SSBP3-213ENST00000530618 A0A0G2JLW4 131 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 FCHSD2O94868 740 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 HSP90AB1P08238 724 aaKnown RBP6.29□□□□□ -1.4
SSBP3-213ENST00000530618 DPEP1P16444 411 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 TM4SF1P30408 202 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 CRKLP46109 303 aaKnown RBP6.29□□□□□ -1.4
SSBP3-213ENST00000530618 PRELPP51888 382 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 TGFB2P61812 414 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 FKBP8Q14318 412 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 AMOTQ4VCS5 1084 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 SULT6B1Q6IMI4 303 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 NFATC2IPQ8NCF5 419 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 GAS2L2Q8NHY3 880 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 BCL2L12Q9HB09 334 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 RTCBQ9Y3I0 505 aaKnown RBP6.29□□□□□ -1.4
SSBP3-213ENST00000530618 CARMIL3Q8ND23 1372 aa6.29□□□□□ -1.4
SSBP3-213ENST00000530618 SOS1Q07889 1333 aaPredicted RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 SLX4Q8IY92 1834 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 POLRMTO00411 1230 aaKnown RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 GABBR2O75899 941 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 HSPA6P17066 643 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 HMGB2P26583 209 aaKnown RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 CALD1Q05682 793 aaKnown RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 PLEKHO1Q53GL0 409 aaPredicted RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 C1orf141Q5JVX7 400 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 TRAPPC3LQ5T215 181 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 FAM9BQ8IZU0 186 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 MIER1Q8N108 512 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 NLGN1Q8N2Q7 840 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 RTF1Q92541 710 aaKnown RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 LGR6Q9HBX8 967 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 GPBP1L1Q9HC44 474 aaPredicted RBP6.28□□□□□ -1.4
SSBP3-213ENST00000530618 LAMB4A4D0S4 1761 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 KDM3BQ7LBC6 1761 aa6.28□□□□□ -1.4
SSBP3-213ENST00000530618 PTCD1O75127 700 aaKnown RBP6.27□□□□□ -1.41
SSBP3-213ENST00000530618 CYP19A1P11511 503 aaPredicted RBP6.27□□□□□ -1.41
SSBP3-213ENST00000530618 CABP4P57796 275 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 DNAJC10Q8IXB1 793 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 DNAJC5GQ8N7S2 189 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 ZNF526Q8TF50 670 aaPredicted RBP6.27□□□□□ -1.41
SSBP3-213ENST00000530618 RUNDC1Q96C34 613 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 SLC52A2Q9HAB3 445 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 NMRK2Q9NPI5 230 aa6.27□□□□□ -1.41
SSBP3-213ENST00000530618 RNMTO43148 476 aaKnown RBP6.26□□□□□ -1.41
SSBP3-213ENST00000530618 CHRNA5P30532 468 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 SLC39A6Q13433 755 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 MTHFSDQ2M296 383 aaKnown RBP6.26□□□□□ -1.41
SSBP3-213ENST00000530618 AKAP4Q5JQC9 854 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 RNF216Q9NWF9 866 aaPredicted RBP6.26□□□□□ -1.41
SSBP3-213ENST00000530618 BCS1LQ9Y276 419 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 ZBTB1Q9Y2K1 713 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 COL15A1P39059 1388 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 CEMIPQ8WUJ3 1361 aa6.26□□□□□ -1.41
SSBP3-213ENST00000530618 NUP98P52948 1817 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 HMOX1P09601 288 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 PRKAR2BP31323 418 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 RFC4P35249 363 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 NFIXQ14938 502 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 IFFO2Q5TF58 517 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 PNISRQ8TF01 805 aaKnown RBP6.25□□□□□ -1.41
SSBP3-213ENST00000530618 CCDC87Q9NVE4 849 aa6.25□□□□□ -1.41
SSBP3-213ENST00000530618 ADAMTSL1Q8N6G6 1762 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 NFKBIEO00221 500 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 HTATSF1O43719 755 aaKnown RBP6.24□□□□□ -1.41
SSBP3-213ENST00000530618 EIF5P55010 431 aaKnown RBP6.24□□□□□ -1.41
SSBP3-213ENST00000530618 NCBP3Q53F19 620 aaKnown RBP6.24□□□□□ -1.41
SSBP3-213ENST00000530618 C9orf131Q5VYM1 1079 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 USPL1Q5W0Q7 1092 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 IL17REQ8NFR9 667 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 CHMP4AQ9BY43 222 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 NARFQ9UHQ1 456 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 ADAMTS8Q9UP79 889 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 PARP3Q9Y6F1 533 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 SNED1Q8TER0 1413 aa6.24□□□□□ -1.41
SSBP3-213ENST00000530618 HEG1Q9ULI3 1381 aa6.23□□□□□ -1.41
SSBP3-213ENST00000530618 TOMM70O94826 608 aa6.23□□□□□ -1.41
SSBP3-213ENST00000530618 RASSF7Q02833 373 aa6.23□□□□□ -1.41
SSBP3-213ENST00000530618 NFE2L2Q16236 605 aa6.23□□□□□ -1.41
SSBP3-213ENST00000530618 ARHGAP27Q6ZUM4 889 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms