RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 DNAJC10Q8IXB1 793 aa18.24■□□□□ 0.51
USF1-209ENST00000529476 VSIG10Q8N0Z9 540 aa18.24■□□□□ 0.51
USF1-209ENST00000529476 GIGYF1O75420 1035 aaPredicted RBP18.23■□□□□ 0.51
USF1-209ENST00000529476 TSR2Q969E8 191 aaKnown RBP18.23■□□□□ 0.51
USF1-209ENST00000529476 SPINK5Q9NQ38 1064 aaPredicted RBP18.23■□□□□ 0.51
USF1-209ENST00000529476 PRAMEF22A3QJZ6 481 aa18.22■□□□□ 0.51
USF1-209ENST00000529476 MYH14Q7Z406 1995 aaKnown RBP18.21■□□□□ 0.51
USF1-209ENST00000529476 SNRPA1P09661 255 aaKnown RBP18.21■□□□□ 0.51
USF1-209ENST00000529476 ZNF827Q17R98 1081 aa18.21■□□□□ 0.51
USF1-209ENST00000529476 KRT24Q2M2I5 525 aa18.21■□□□□ 0.51
USF1-209ENST00000529476 ARXQ96QS3 562 aa18.21■□□□□ 0.51
USF1-209ENST00000529476 LAMB4A4D0S4 1761 aa18.21■□□□□ 0.51
USF1-209ENST00000529476 TUBGCP6Q96RT7 1819 aa18.21■□□□□ 0.51
USF1-209ENST00000529476 GOLGA2Q08379 1002 aa18.2■□□□□ 0.5
USF1-209ENST00000529476 AKT1S1Q96B36 256 aa18.2■□□□□ 0.5
USF1-209ENST00000529476 FANCIQ9NVI1 1328 aa18.2■□□□□ 0.5
USF1-209ENST00000529476 CYP19A1P11511 503 aaPredicted RBP18.19■□□□□ 0.5
USF1-209ENST00000529476 USP16Q9Y5T5 823 aa18.19■□□□□ 0.5
USF1-209ENST00000529476 CRKLP46109 303 aaKnown RBP18.18■□□□□ 0.5
USF1-209ENST00000529476 GPR162Q16538 588 aa18.18■□□□□ 0.5
USF1-209ENST00000529476 CDCA7LQ96GN5 454 aa18.18■□□□□ 0.5
USF1-209ENST00000529476 TEX13AQ9BXU3 409 aaPredicted RBP18.18■□□□□ 0.5
USF1-209ENST00000529476 CNTNAP4Q9C0A0 1308 aa18.18■□□□□ 0.5
USF1-209ENST00000529476 UBR3Q6ZT12 1888 aa18.18■□□□□ 0.5
USF1-209ENST00000529476 CEP350Q5VT06 3117 aa18.17■□□□□ 0.5
USF1-209ENST00000529476 STARD3NLO95772 234 aa18.17■□□□□ 0.5
USF1-209ENST00000529476 HMGB2P26583 209 aaKnown RBP18.17■□□□□ 0.5
USF1-209ENST00000529476 AK7Q96M32 723 aa18.17■□□□□ 0.5
USF1-209ENST00000529476 MYH16Q9H6N6 1097 aa18.17■□□□□ 0.5
USF1-209ENST00000529476 GNPATO15228 680 aa18.16■□□□□ 0.5
USF1-209ENST00000529476 SLFN5Q08AF3 891 aa18.16■□□□□ 0.5
USF1-209ENST00000529476 RC3H1Q5TC82 1133 aaKnown RBP18.16■□□□□ 0.5
USF1-209ENST00000529476 INTS5Q6P9B9 1019 aaKnown RBP18.16■□□□□ 0.5
USF1-209ENST00000529476 SMIM5Q71RC9 77 aa18.16■□□□□ 0.5
USF1-209ENST00000529476 C8orf58Q8NAV2 365 aa18.16■□□□□ 0.5
USF1-209ENST00000529476 CCDC87Q9NVE4 849 aa18.16■□□□□ 0.5
USF1-209ENST00000529476 QSER1Q2KHR3 1735 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 E9PSI1 815 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 ELL2O00472 640 aaPredicted RBP18.15■□□□□ 0.5
USF1-209ENST00000529476 A1BGP04217 495 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 DUSP27Q5VZP5 1158 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 AMIGO3Q86WK7 504 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 TFCP2L1Q9NZI6 479 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 ZBED9Q6R2W3 1325 aa18.15■□□□□ 0.5
USF1-209ENST00000529476 TSPYL6Q8N831 410 aa18.14■□□□□ 0.49
USF1-209ENST00000529476 ZBTB1Q9Y2K1 713 aa18.14■□□□□ 0.49
USF1-209ENST00000529476 EIF2S2P20042 333 aaKnown RBP18.13■□□□□ 0.49
USF1-209ENST00000529476 CANXP27824 592 aaKnown RBP18.13■□□□□ 0.49
USF1-209ENST00000529476 PIP4K2AP48426 406 aaPredicted RBP18.13■□□□□ 0.49
USF1-209ENST00000529476 EXOSC9Q06265 439 aaKnown RBP18.13■□□□□ 0.49
USF1-209ENST00000529476 NECTIN2Q92692 538 aa18.13■□□□□ 0.49
USF1-209ENST00000529476 RPS6KA4O75676 772 aa18.12■□□□□ 0.49
USF1-209ENST00000529476 PHF14O94880 888 aa18.12■□□□□ 0.49
USF1-209ENST00000529476 HOXB7P09629 217 aa18.12■□□□□ 0.49
USF1-209ENST00000529476 YTHDC1Q96MU7 727 aaKnown RBP18.12■□□□□ 0.49
USF1-209ENST00000529476 PNPLA7Q6ZV29 1317 aa18.12■□□□□ 0.49
USF1-209ENST00000529476 TRMT2AQ8IZ69 625 aaKnown RBP18.11■□□□□ 0.49
USF1-209ENST00000529476 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
USF1-209ENST00000529476 RTCBQ9Y3I0 505 aaKnown RBP18.11■□□□□ 0.49
USF1-209ENST00000529476 C4AP0C0L4 1744 aa18.1■□□□□ 0.49
USF1-209ENST00000529476 SOS1Q07889 1333 aaPredicted RBP18.1■□□□□ 0.49
USF1-209ENST00000529476 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.1■□□□□ 0.49
USF1-209ENST00000529476 NBPF26B4DH59 902 aa18.1■□□□□ 0.49
USF1-209ENST00000529476 TWISTNBQ3B726 338 aaPredicted RBP18.1■□□□□ 0.49
USF1-209ENST00000529476 HDGFL1Q5TGJ6 251 aa18.1■□□□□ 0.49
USF1-209ENST00000529476 NBPF10Q6P3W6 841 aaKnown RBP18.1■□□□□ 0.49
USF1-209ENST00000529476 COL23A1Q86Y22 540 aaPredicted RBP18.1■□□□□ 0.49
USF1-209ENST00000529476 KLHL34Q8N239 644 aa18.1■□□□□ 0.49
USF1-209ENST00000529476 NBPF15Q8N660 670 aa18.1■□□□□ 0.49
USF1-209ENST00000529476 SSFA2P28290 1259 aa18.09■□□□□ 0.49
USF1-209ENST00000529476 EIF5P55010 431 aaKnown RBP18.08■□□□□ 0.48
USF1-209ENST00000529476 TRAPPC3LQ5T215 181 aa18.08■□□□□ 0.48
USF1-209ENST00000529476 ZNF330Q9Y3S2 320 aaPredicted RBP18.08■□□□□ 0.48
USF1-209ENST00000529476 COL15A1P39059 1388 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 ERBB4Q15303 1308 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 MSH5O43196 834 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 VAMP4O75379 141 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 ANXA1P04083 346 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 MYL6BP14649 208 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 IL6STP40189 918 aaPredicted RBP18.07■□□□□ 0.48
USF1-209ENST00000529476 PDIA6Q15084 440 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 PROSER3Q2NL68 480 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 FLAD1Q8NFF5 587 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 ARHGEF1Q92888 912 aaKnown RBP18.07■□□□□ 0.48
USF1-209ENST00000529476 CHPF2Q9P2E5 772 aa18.07■□□□□ 0.48
USF1-209ENST00000529476 ADRA2BP18089 450 aa18.06■□□□□ 0.48
USF1-209ENST00000529476 NLGN2Q8NFZ4 835 aa18.06■□□□□ 0.48
USF1-209ENST00000529476 TCERG1O14776 1098 aaKnown RBP18.05■□□□□ 0.48
USF1-209ENST00000529476 RFC4P35249 363 aa18.04■□□□□ 0.48
USF1-209ENST00000529476 CCDC30Q5VVM6 783 aa18.04■□□□□ 0.48
USF1-209ENST00000529476 DDX21Q9NR30 783 aaKnown RBP eCLIP18.04■□□□□ 0.48
USF1-209ENST00000529476 DBF4Q9UBU7 674 aaPredicted RBP18.04■□□□□ 0.48
USF1-209ENST00000529476 GOLGB1Q14789 3259 aaKnown RBP18.04■□□□□ 0.48
USF1-209ENST00000529476 A0A087WZG4 1122 aa18.03■□□□□ 0.48
USF1-209ENST00000529476 YBX3P16989 372 aaKnown RBP eCLIP18.03■□□□□ 0.48
USF1-209ENST00000529476 LRP10Q7Z4F1 713 aa18.03■□□□□ 0.48
USF1-209ENST00000529476 NPM2Q86SE8 214 aaKnown RBP18.03■□□□□ 0.48
USF1-209ENST00000529476 SRP68Q9UHB9 627 aaKnown RBP18.03■□□□□ 0.48
USF1-209ENST00000529476 TBC1D2BQ9UPU7 963 aa18.03■□□□□ 0.48
USF1-209ENST00000529476 CHMP4AQ9BY43 222 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms