RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 ZPR1O75312 459 aa20.58■□□□□ 0.89
CAPN1-213ENST00000527897 PNNQ9H307 717 aaKnown RBP20.58■□□□□ 0.89
CAPN1-213ENST00000527897 ZNF330Q9Y3S2 320 aaPredicted RBP20.58■□□□□ 0.89
CAPN1-213ENST00000527897 SOS1Q07889 1333 aaPredicted RBP20.57■□□□□ 0.88
CAPN1-213ENST00000527897 PLEKHF1Q96S99 279 aa20.57■□□□□ 0.88
CAPN1-213ENST00000527897 PARP3Q9Y6F1 533 aa20.57■□□□□ 0.88
CAPN1-213ENST00000527897 COL15A1P39059 1388 aa20.57■□□□□ 0.88
CAPN1-213ENST00000527897 HTATSF1O43719 755 aaKnown RBP20.56■□□□□ 0.88
CAPN1-213ENST00000527897 FKBP8Q14318 412 aa20.56■□□□□ 0.88
CAPN1-213ENST00000527897 NFE2L2Q16236 605 aa20.56■□□□□ 0.88
CAPN1-213ENST00000527897 USPL1Q5W0Q7 1092 aa20.56■□□□□ 0.88
CAPN1-213ENST00000527897 CHD4Q14839 1912 aa20.55■□□□□ 0.88
CAPN1-213ENST00000527897 YBX3P16989 372 aaKnown RBP eCLIP20.55■□□□□ 0.883e-6■□□□□ 8.2
CAPN1-213ENST00000527897 TEX13AQ9BXU3 409 aaPredicted RBP20.55■□□□□ 0.88
CAPN1-213ENST00000527897 MIS18AQ9NYP9 233 aa20.54■□□□□ 0.88
CAPN1-213ENST00000527897 WDR43Q15061 677 aaKnown RBP eCLIP20.53■□□□□ 0.88
CAPN1-213ENST00000527897 THUMPD2Q9BTF0 503 aaKnown RBP20.53■□□□□ 0.88
CAPN1-213ENST00000527897 TAF7Q15545 349 aaPredicted RBP20.52■□□□□ 0.88
CAPN1-213ENST00000527897 NPM2Q86SE8 214 aaKnown RBP20.52■□□□□ 0.88
CAPN1-213ENST00000527897 CCDC146Q8IYE0 955 aa20.52■□□□□ 0.88
CAPN1-213ENST00000527897 PRKRIP1Q9H875 184 aaPredicted RBP20.52■□□□□ 0.88
CAPN1-213ENST00000527897 PRAMEF22A3QJZ6 481 aa20.51■□□□□ 0.87
CAPN1-213ENST00000527897 A1BGP04217 495 aa20.51■□□□□ 0.87
CAPN1-213ENST00000527897 NARFQ9UHQ1 456 aa20.51■□□□□ 0.87
CAPN1-213ENST00000527897 N4BP2Q86UW6 1770 aaPredicted RBP20.5■□□□□ 0.87
CAPN1-213ENST00000527897 GRIN3BO60391 1043 aa20.5■□□□□ 0.87
CAPN1-213ENST00000527897 PIP4K2AP48426 406 aaPredicted RBP20.5■□□□□ 0.87
CAPN1-213ENST00000527897 DDR1Q08345 913 aa20.5■□□□□ 0.87
CAPN1-213ENST00000527897 EIF5P55010 431 aaKnown RBP20.49■□□□□ 0.87
CAPN1-213ENST00000527897 RIPK4P57078 832 aa20.49■□□□□ 0.87
CAPN1-213ENST00000527897 USP16Q9Y5T5 823 aa20.49■□□□□ 0.87
CAPN1-213ENST00000527897 C10orf71Q711Q0 1435 aa20.49■□□□□ 0.87
CAPN1-213ENST00000527897 KIF13BQ9NQT8 1826 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 A0A087WZG4 1122 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 A0A0G2JLW4 131 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 SNRPA1P09661 255 aaKnown RBP20.48■□□□□ 0.87
CAPN1-213ENST00000527897 NEUROD2Q15784 382 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 BICDL1Q6ZP65 573 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 TBC1D2BQ9UPU7 963 aa20.48■□□□□ 0.87
CAPN1-213ENST00000527897 RRP7AQ9Y3A4 280 aaKnown RBP20.48■□□□□ 0.87
CAPN1-213ENST00000527897 PXDNLA1KZ92 1463 aa20.47■□□□□ 0.87
CAPN1-213ENST00000527897 POLRMTO00411 1230 aaKnown RBP20.46■□□□□ 0.87
CAPN1-213ENST00000527897 TM4SF1P30408 202 aa20.46■□□□□ 0.87
CAPN1-213ENST00000527897 IL6STP40189 918 aaPredicted RBP20.46■□□□□ 0.87
CAPN1-213ENST00000527897 TGFB2P61812 414 aa20.46■□□□□ 0.87
CAPN1-213ENST00000527897 NFIXQ14938 502 aa20.46■□□□□ 0.87
CAPN1-213ENST00000527897 PNISRQ8TF01 805 aaKnown RBP20.46■□□□□ 0.87
CAPN1-213ENST00000527897 DPEP1P16444 411 aa20.45■□□□□ 0.86
CAPN1-213ENST00000527897 TMPOP42166 694 aaKnown RBP20.45■□□□□ 0.86
CAPN1-213ENST00000527897 BCL2L12Q9HB09 334 aa20.45■□□□□ 0.86
CAPN1-213ENST00000527897 ZNF316A6NFI3 1004 aaPredicted RBP20.44■□□□□ 0.86
CAPN1-213ENST00000527897 ADAMTS8Q9UP79 889 aa20.44■□□□□ 0.86
CAPN1-213ENST00000527897 BCS1LQ9Y276 419 aa20.44■□□□□ 0.86
CAPN1-213ENST00000527897 KIAA1551Q9HCM1 1747 aa20.44■□□□□ 0.86
CAPN1-213ENST00000527897 KDM3BQ7LBC6 1761 aa20.44■□□□□ 0.86
CAPN1-213ENST00000527897 AFDNP55196 1824 aaKnown RBP20.43■□□□□ 0.86
CAPN1-213ENST00000527897 LMOD3Q0VAK6 560 aa20.43■□□□□ 0.86
CAPN1-213ENST00000527897 RUNDC1Q96C34 613 aa20.43■□□□□ 0.86
CAPN1-213ENST00000527897 SCN7AQ01118 1682 aa20.42■□□□□ 0.86
CAPN1-213ENST00000527897 SERPINB2P05120 415 aa20.42■□□□□ 0.86
CAPN1-213ENST00000527897 DZIP3Q86Y13 1208 aaKnown RBP20.42■□□□□ 0.86
CAPN1-213ENST00000527897 ZNF784Q8NCA9 323 aaPredicted RBP20.42■□□□□ 0.86
CAPN1-213ENST00000527897 TSPYL4Q9UJ04 414 aa20.42■□□□□ 0.86
CAPN1-213ENST00000527897 TBC1D9BQ66K14 1250 aa20.41■□□□□ 0.86
CAPN1-213ENST00000527897 LAMB4A4D0S4 1761 aa20.4■□□□□ 0.86
CAPN1-213ENST00000527897 CHRNA5P30532 468 aa20.4■□□□□ 0.86
CAPN1-213ENST00000527897 EIF4A1P60842 406 aaKnown RBP20.4■□□□□ 0.86
CAPN1-213ENST00000527897 NGEFQ8N5V2 710 aa20.4■□□□□ 0.86
CAPN1-213ENST00000527897 CAMTA2O94983 1202 aa20.39■□□□□ 0.85
CAPN1-213ENST00000527897 LAS1LQ9Y4W2 734 aaKnown RBP20.39■□□□□ 0.85
CAPN1-213ENST00000527897 NBPF26B4DH59 902 aa20.38■□□□□ 0.85
CAPN1-213ENST00000527897 NPHP1O15259 732 aa20.38■□□□□ 0.85
CAPN1-213ENST00000527897 GIGYF1O75420 1035 aaPredicted RBP20.38■□□□□ 0.85
CAPN1-213ENST00000527897 NBPF10Q6P3W6 841 aaKnown RBP20.38■□□□□ 0.85
CAPN1-213ENST00000527897 NBPF15Q8N660 670 aa20.38■□□□□ 0.85
CAPN1-213ENST00000527897 BCORQ6W2J9 1755 aa20.37■□□□□ 0.85
CAPN1-213ENST00000527897 KCNA3P22001 575 aa20.37■□□□□ 0.85
CAPN1-213ENST00000527897 CCDC24Q8N4L8 307 aa20.37■□□□□ 0.85
CAPN1-213ENST00000527897 PIM2Q9P1W9 311 aa20.37■□□□□ 0.85
CAPN1-213ENST00000527897 BRCA1P38398 1863 aaKnown RBP20.37■□□□□ 0.85
CAPN1-213ENST00000527897 SETDB2Q96T68 719 aa20.36■□□□□ 0.85
CAPN1-213ENST00000527897 NRXN2Q9P2S2 1712 aa20.36■□□□□ 0.85
CAPN1-213ENST00000527897 CARMIL3Q8ND23 1372 aa20.35■□□□□ 0.85
CAPN1-213ENST00000527897 MYL6BP14649 208 aa20.35■□□□□ 0.85
CAPN1-213ENST00000527897 ARHGAP27Q6ZUM4 889 aa20.35■□□□□ 0.85
CAPN1-213ENST00000527897 DALRD3Q5D0E6 543 aaKnown RBP20.34■□□□□ 0.85
CAPN1-213ENST00000527897 TRIM35Q9UPQ4 493 aa20.34■□□□□ 0.85
CAPN1-213ENST00000527897 ZNF652Q9Y2D9 606 aa20.34■□□□□ 0.85
CAPN1-213ENST00000527897 ANP32CO43423 234 aa20.33■□□□□ 0.85
CAPN1-213ENST00000527897 EIF2S2P20042 333 aaKnown RBP20.33■□□□□ 0.85
CAPN1-213ENST00000527897 CCDC184Q52MB2 194 aa20.33■□□□□ 0.85
CAPN1-213ENST00000527897 APAF1O14727 1248 aa20.32■□□□□ 0.84
CAPN1-213ENST00000527897 C2CD5Q86YS7 1000 aa20.32■□□□□ 0.84
CAPN1-213ENST00000527897 CNBD1Q8NA66 436 aa20.32■□□□□ 0.84
CAPN1-213ENST00000527897 FAM177BA6PVY3 158 aa20.31■□□□□ 0.84
CAPN1-213ENST00000527897 PRR5LQ6MZQ0 368 aa20.31■□□□□ 0.84
CAPN1-213ENST00000527897 ZNF526Q8TF50 670 aaPredicted RBP20.31■□□□□ 0.84
CAPN1-213ENST00000527897 NECTIN2Q92692 538 aa20.31■□□□□ 0.84
CAPN1-213ENST00000527897 ARFGEF1Q9Y6D6 1849 aa20.3■□□□□ 0.84
CAPN1-213ENST00000527897 SENP3-EIF4A1A0A087X0R7 540 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms