RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 USP48Q86UV5 1035 aa7.55□□□□□ -1.2
USP47-204ENST00000525078 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP47-204ENST00000525078 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP47-204ENST00000525078 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP47-204ENST00000525078 DDX41Q9UJV9 622 aaKnown RBP7.55□□□□□ -1.2
USP47-204ENST00000525078 SUGT1Q9Y2Z0 365 aa7.55□□□□□ -1.2
USP47-204ENST00000525078 PCDHB11Q9Y5F2 797 aa7.55□□□□□ -1.2
USP47-204ENST00000525078 PCDHGB7Q9Y5F8 929 aa7.55□□□□□ -1.2
USP47-204ENST00000525078 MRPL42Q9Y6G3 142 aaKnown RBP7.55□□□□□ -1.2
USP47-204ENST00000525078 LOC102724159A0A0B4J2E5 919 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 MAGEB6P1A0A0J9YX57 407 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 GPR182O15218 404 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 PWP2Q15269 919 aaKnown RBP7.54□□□□□ -1.2
USP47-204ENST00000525078 C16orf46Q6P387 395 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 MCF2L2Q86YR7 1114 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 ANKK1Q8NFD2 765 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 SCG3Q8WXD2 468 aaKnown RBP7.54□□□□□ -1.2
USP47-204ENST00000525078 NIF3L1Q9GZT8 377 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 EVA1BQ9NVM1 165 aa7.54□□□□□ -1.2
USP47-204ENST00000525078 TPD52L2O43399 206 aaKnown RBP7.53□□□□□ -1.2
USP47-204ENST00000525078 FZD6O60353 706 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 GNA15P30679 374 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 BCAMP50895 628 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 NBPF20Q3BBV1 942 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 GORABQ5T7V8 394 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 CHMP7Q8WUX9 453 aaPredicted RBP7.53□□□□□ -1.2
USP47-204ENST00000525078 CRELD1Q96HD1 420 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 NUDT12Q9BQG2 462 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 BRINP2Q9C0B6 783 aa7.53□□□□□ -1.2
USP47-204ENST00000525078 SALL2Q9Y467 1007 aaPredicted RBP7.53□□□□□ -1.2
USP47-204ENST00000525078 SOWAHBA6NEL2 793 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 MYCP01106 439 aaPredicted RBP7.52□□□□□ -1.21
USP47-204ENST00000525078 RACK1P63244 317 aaKnown RBP7.52□□□□□ -1.21
USP47-204ENST00000525078 ENOX2Q16206 610 aaKnown RBP7.52□□□□□ -1.21
USP47-204ENST00000525078 FILIP1Q7Z7B0 1213 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 LAPTM4BQ86VI4 370 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 CKAP2LQ8IYA6 745 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 ALKBH8Q96BT7 664 aaKnown RBP7.52□□□□□ -1.21
USP47-204ENST00000525078 FAM129BQ96TA1 746 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 PRR14Q9BWN1 585 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 ZNF358Q9NW07 568 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 COL4A3BPQ9Y5P4 624 aa7.52□□□□□ -1.21
USP47-204ENST00000525078 K7ELQ4 463 aaPredicted RBP7.51□□□□□ -1.21
USP47-204ENST00000525078 HSP90AB2PQ58FF8 381 aa7.51□□□□□ -1.21
USP47-204ENST00000525078 HS2ST1Q7LGA3 356 aa7.51□□□□□ -1.21
USP47-204ENST00000525078 SAP130Q9H0E3 1048 aa7.51□□□□□ -1.21
USP47-204ENST00000525078 ESF1Q9H501 851 aaKnown RBP7.51□□□□□ -1.21
USP47-204ENST00000525078 STIM2Q9P246 746 aa7.51□□□□□ -1.21
USP47-204ENST00000525078 ESPNB1AK53 854 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 ZBTB24O43167 697 aaPredicted RBP7.5□□□□□ -1.21
USP47-204ENST00000525078 PARNO95453 639 aaKnown RBP7.5□□□□□ -1.21
USP47-204ENST00000525078 Q6ZNB5 142 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 SH3BP5LQ7L8J4 393 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 ZFRQ96KR1 1074 aaKnown RBP7.5□□□□□ -1.21
USP47-204ENST00000525078 WBP1LQ9NX94 342 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 GGT7Q9UJ14 662 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 AK5Q9Y6K8 562 aa7.5□□□□□ -1.21
USP47-204ENST00000525078 ATAD2Q6PL18 1390 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 FGRP09769 529 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 XRCC5P13010 732 aaKnown RBP7.49□□□□□ -1.21
USP47-204ENST00000525078 AGERQ15109 404 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 SCUBE3Q8IX30 993 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 EXOC8Q8IYI6 725 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 SLC10A4Q96EP9 437 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 IFT57Q9NWB7 429 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 SLC52A1Q9NWF4 448 aa7.49□□□□□ -1.21
USP47-204ENST00000525078 NR1I2O75469 434 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 IGHA2P01877 340 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 NYAP1Q6ZVC0 841 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 TNS4Q8IZW8 715 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 ABTB2Q8N961 1025 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 FRMD6Q96NE9 622 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 PCDH12Q9NPG4 1184 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 SPG7Q9UQ90 795 aa7.48□□□□□ -1.21
USP47-204ENST00000525078 BACH1O14867 736 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 PPP1R12AO14974 1030 aaPredicted RBP7.47□□□□□ -1.21
USP47-204ENST00000525078 DNAJC6O75061 913 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 CTSHP09668 335 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 EIF4BP23588 611 aaKnown RBP7.47□□□□□ -1.21
USP47-204ENST00000525078 KCNC4Q03721 635 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 FBF1Q8TES7 1133 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 SRA1Q9HD15 236 aaKnown RBP7.47□□□□□ -1.21
USP47-204ENST00000525078 NEUROD4Q9HD90 331 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 CHPF2Q9P2E5 772 aa7.47□□□□□ -1.21
USP47-204ENST00000525078 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.47□□□□□ -1.21
USP47-204ENST00000525078 ATF4P18848 351 aaPredicted RBP7.46□□□□□ -1.22
USP47-204ENST00000525078 RAB15P59190 212 aa7.46□□□□□ -1.22
USP47-204ENST00000525078 UBE2Q2Q8WVN8 375 aa7.46□□□□□ -1.22
USP47-204ENST00000525078 THAP11Q96EK4 314 aa7.46□□□□□ -1.22
USP47-204ENST00000525078 SPC25Q9HBM1 224 aa7.46□□□□□ -1.22
USP47-204ENST00000525078 POLIQ9UNA4 740 aa7.46□□□□□ -1.22
USP47-204ENST00000525078 PPP1R12BO60237 982 aaPredicted RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 PEX14O75381 377 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 DXOO77932 396 aaKnown RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 MAP4K4O95819 1239 aaPredicted RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 SSBP05455 408 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP47-204ENST00000525078 MZF1P28698 734 aaPredicted RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 USP5P45974 858 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 PAK2Q13177 524 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 ERFEQ4G0M1 354 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms