RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 FZD5Q13467 585 aa6.45□□□□□ -1.38
HMGB1P41-201ENST00000520234 NBPF10Q6P3W6 841 aaKnown RBP6.45□□□□□ -1.38
HMGB1P41-201ENST00000520234 RNF135Q8IUD6 432 aa6.45□□□□□ -1.38
HMGB1P41-201ENST00000520234 NBPF15Q8N660 670 aa6.45□□□□□ -1.38
HMGB1P41-201ENST00000520234 CHIC2Q9UKJ5 165 aa6.45□□□□□ -1.38
HMGB1P41-201ENST00000520234 LZTS3O60299 673 aaPredicted RBP6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 BMP4P12644 408 aa6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 MAP7D1Q3KQU3 841 aa6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 CCDC82Q8N4S0 544 aa6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 PPP1R12CQ9BZL4 782 aa6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 COL17A1Q9UMD9 1497 aaPredicted RBP6.44□□□□□ -1.38
HMGB1P41-201ENST00000520234 ATP9BO43861 1147 aa6.43□□□□□ -1.38
HMGB1P41-201ENST00000520234 UCN2Q96RP3 112 aa6.43□□□□□ -1.38
HMGB1P41-201ENST00000520234 TIMMDC1Q9NPL8 285 aa6.43□□□□□ -1.38
HMGB1P41-201ENST00000520234 PALM3A6NDB9 673 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 SPATA31C2B4DYI2 1134 aa6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 ERVH48-1M5A8F1 160 aa6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 THBS1P07996 1170 aa6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 SKIP12755 728 aa6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 PLEKHM2Q8IWE5 1019 aa6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 TFIP11Q9UBB9 837 aaKnown RBP6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 ATXN7L1Q9ULK2 861 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P41-201ENST00000520234 ATP5J2-PTCD1G3V325 749 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 MEN1O00255 615 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 ARAFP10398 606 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 LBRQ14739 615 aaKnown RBP6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 SLC27A3Q5K4L6 730 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 TBC1D9Q6ZT07 1266 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 CHSY3Q70JA7 882 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 PLPP7Q8NBV4 271 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 TRIM11Q96F44 468 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 DOLKQ9UPQ8 538 aa6.41□□□□□ -1.38
HMGB1P41-201ENST00000520234 USP17L5A8MUK1 530 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 PIK3CDO00329 1044 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 C2CD2LO14523 706 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 APBA3O96018 575 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 H2AFB1P0C5Y9 115 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 H2AFB2P0C5Z0 115 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 SIRT1Q96EB6 747 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 CCDC85AQ96PX6 553 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 PLVAPQ9BX97 442 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 PCDHB11Q9Y5F2 797 aa6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 MAFBQ9Y5Q3 323 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P41-201ENST00000520234 SPDYE3A6NKU9 549 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 RAB15P59190 212 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 USP4Q13107 963 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 LAMC2Q13753 1193 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 CFAP70Q5T0N1 1121 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 TAS1R3Q7RTX0 852 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 GRIP2Q9C0E4 1043 aa6.39□□□□□ -1.39
HMGB1P41-201ENST00000520234 USP17L3A6NCW0 530 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 USP17L4A6NCW7 530 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 WASLO00401 505 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 PPP1R15AO75807 674 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 MYCP01106 439 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 LMOD1P29536 600 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 UBAP2LQ14157 1087 aaKnown RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 EML3Q32P44 896 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 PRRT3Q5FWE3 981 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 USP17L2Q6R6M4 530 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 USP17L1Q7RTZ2 530 aa6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 ESF1Q9H501 851 aaKnown RBP6.38□□□□□ -1.39
HMGB1P41-201ENST00000520234 ELNP15502 786 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 FGFR3P22607 806 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 ERVK-9P63128 1117 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 TSGA10IPQ3SY00 556 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 TRIM50Q86XT4 487 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 NLRP3Q96P20 1036 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 ARID3AQ99856 593 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 CYLDQ9NQC7 956 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 NOD1Q9Y239 953 aa6.37□□□□□ -1.39
HMGB1P41-201ENST00000520234 A0A1W2PRU2 124 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 NEURL1BA8MQ27 555 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 NCOA4Q13772 614 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 OXLD1Q5BKU9 147 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 CC2D2BQ6DHV5 1058 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 PBXIP1Q96AQ6 731 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 NACC1Q96RE7 527 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 CDCA7Q9BWT1 371 aaPredicted RBP6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 VRTNQ9H8Y1 702 aa6.36□□□□□ -1.39
HMGB1P41-201ENST00000520234 RFX1P22670 979 aa6.35□□□□□ -1.39
HMGB1P41-201ENST00000520234 ATP1A2P50993 1020 aa6.35□□□□□ -1.39
HMGB1P41-201ENST00000520234 DEPDC4Q8N2C3 294 aa6.35□□□□□ -1.39
HMGB1P41-201ENST00000520234 GPAMQ9HCL2 828 aa6.35□□□□□ -1.39
HMGB1P41-201ENST00000520234 MKRN1Q9UHC7 482 aaKnown RBP6.35□□□□□ -1.39
HMGB1P41-201ENST00000520234 ACIN1Q9UKV3 1341 aaKnown RBP6.34□□□□□ -1.39
HMGB1P41-201ENST00000520234 A0A1B0GTH6 734 aa6.34□□□□□ -1.39
HMGB1P41-201ENST00000520234 SRPK2P78362 688 aaKnown RBP6.34□□□□□ -1.39
HMGB1P41-201ENST00000520234 KANK4Q5T7N3 995 aaPredicted RBP6.34□□□□□ -1.39
HMGB1P41-201ENST00000520234 ABHD17AQ96GS6 310 aa6.34□□□□□ -1.39
HMGB1P41-201ENST00000520234 CSB-PGBD3P0DP91 1061 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 ADH6P28332 368 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 SCTRP47872 440 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 CTBSQ01459 385 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 LARP1Q6PKG0 1096 aaKnown RBP6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 CYP2U1Q7Z449 544 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 PGBD3Q8N328 593 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 NDFIP2Q9NV92 336 aa6.33□□□□□ -1.4
HMGB1P41-201ENST00000520234 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.32□□□□□ -1.4
HMGB1P41-201ENST00000520234 GTF2IP78347 998 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms