RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 NOS2P35228 1153 aa10.63□□□□□ -0.71
CPNE3-201ENST00000517354 PLA2G4AP47712 749 aa10.63□□□□□ -0.71
CPNE3-201ENST00000517354 FOXK2Q01167 660 aa10.63□□□□□ -0.71
CPNE3-201ENST00000517354 C4orf17Q53FE4 359 aa10.63□□□□□ -0.71
CPNE3-201ENST00000517354 PARP3Q9Y6F1 533 aa10.63□□□□□ -0.71
CPNE3-201ENST00000517354 SNRPBP14678 240 aaKnown RBP10.62□□□□□ -0.71
CPNE3-201ENST00000517354 WEE1P30291 646 aa10.62□□□□□ -0.71
CPNE3-201ENST00000517354 TEAD4Q15561 434 aa10.62□□□□□ -0.71
CPNE3-201ENST00000517354 ZNF787Q6DD87 383 aa10.62□□□□□ -0.71
CPNE3-201ENST00000517354 L3MBTL2Q969R5 705 aa10.62□□□□□ -0.71
CPNE3-201ENST00000517354 NBPF1Q3BBV0 1214 aa10.61□□□□□ -0.71
CPNE3-201ENST00000517354 IQSEC3Q9UPP2 1182 aaPredicted RBP10.61□□□□□ -0.71
CPNE3-201ENST00000517354 HCN4Q9Y3Q4 1203 aa10.61□□□□□ -0.71
CPNE3-201ENST00000517354 FOXO3O43524 673 aa10.6□□□□□ -0.71
CPNE3-201ENST00000517354 GAS2L1Q99501 681 aaPredicted RBP10.6□□□□□ -0.71
CPNE3-201ENST00000517354 NEUROD4Q9HD90 331 aa10.6□□□□□ -0.71
CPNE3-201ENST00000517354 CXXC1Q9P0U4 656 aaPredicted RBP10.6□□□□□ -0.71
CPNE3-201ENST00000517354 MTMR7Q9Y216 660 aa10.6□□□□□ -0.71
CPNE3-201ENST00000517354 USP3Q9Y6I4 520 aa10.6□□□□□ -0.71
CPNE3-201ENST00000517354 LCE2BO14633 110 aa10.59□□□□□ -0.71
CPNE3-201ENST00000517354 TATP17735 454 aaPredicted RBP10.59□□□□□ -0.71
CPNE3-201ENST00000517354 STAG2Q8N3U4 1231 aa10.59□□□□□ -0.71
CPNE3-201ENST00000517354 NGLY1Q96IV0 654 aa10.59□□□□□ -0.71
CPNE3-201ENST00000517354 TRAIPQ9BWF2 469 aa10.59□□□□□ -0.71
CPNE3-201ENST00000517354 POTECB2RU33 542 aa10.58□□□□□ -0.72
CPNE3-201ENST00000517354 C21orf2O43822 256 aa10.58□□□□□ -0.72
CPNE3-201ENST00000517354 SSFA2P28290 1259 aa10.58□□□□□ -0.72
CPNE3-201ENST00000517354 PTSQ03393 145 aa10.58□□□□□ -0.72
CPNE3-201ENST00000517354 PGBD3Q8N328 593 aa10.58□□□□□ -0.72
CPNE3-201ENST00000517354 A0A1B0GTH6 734 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 OCLNQ16625 522 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 ARSJQ5FYB0 599 aaPredicted RBP10.57□□□□□ -0.72
CPNE3-201ENST00000517354 BICDL1Q6ZP65 573 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 RIPOR1Q6ZS17 1223 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 MKNK1Q9BUB5 465 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 C2orf49Q9BVC5 232 aaPredicted RBP10.57□□□□□ -0.72
CPNE3-201ENST00000517354 DYRK1BQ9Y463 629 aa10.57□□□□□ -0.72
CPNE3-201ENST00000517354 PTCD1O75127 700 aaKnown RBP10.56□□□□□ -0.72
CPNE3-201ENST00000517354 BRD1O95696 1058 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 F11P03951 625 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 MSX1P28360 303 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 FKBP5Q13451 457 aaPredicted RBP10.55□□□□□ -0.72
CPNE3-201ENST00000517354 C1orf216Q8TAB5 229 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 ZDHHC1Q8WTX9 485 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 GJA3Q9Y6H8 435 aa10.55□□□□□ -0.72
CPNE3-201ENST00000517354 EML1O00423 815 aa10.54□□□□□ -0.72
CPNE3-201ENST00000517354 ARID4AP29374 1257 aaPredicted RBP10.54□□□□□ -0.72
CPNE3-201ENST00000517354 AEBP1Q8IUX7 1158 aa10.54□□□□□ -0.72
CPNE3-201ENST00000517354 PHACTR1Q9C0D0 580 aa10.54□□□□□ -0.72
CPNE3-201ENST00000517354 GPAMQ9HCL2 828 aa10.54□□□□□ -0.72
CPNE3-201ENST00000517354 SLAIN2Q9P270 581 aa10.54□□□□□ -0.72
CPNE3-201ENST00000517354 C1orf53Q5VUE5 145 aa10.53□□□□□ -0.72
CPNE3-201ENST00000517354 ALDH16A1Q8IZ83 802 aa10.53□□□□□ -0.72
CPNE3-201ENST00000517354 CCDC155Q8N6L0 562 aa10.53□□□□□ -0.72
CPNE3-201ENST00000517354 ZDHHC3Q9NYG2 299 aa10.53□□□□□ -0.72
CPNE3-201ENST00000517354 SLC35F4A4IF30 521 aa10.52□□□□□ -0.73
CPNE3-201ENST00000517354 TXLNAP40222 546 aa10.52□□□□□ -0.73
CPNE3-201ENST00000517354 TRIM26Q12899 539 aaPredicted RBP10.52□□□□□ -0.73
CPNE3-201ENST00000517354 NAA30Q147X3 362 aaPredicted RBP10.52□□□□□ -0.73
CPNE3-201ENST00000517354 SH3PXD2AQ5TCZ1 1133 aa10.52□□□□□ -0.73
CPNE3-201ENST00000517354 KCTD17Q8N5Z5 321 aa10.52□□□□□ -0.73
CPNE3-201ENST00000517354 CCER1Q8TC90 406 aaPredicted RBP10.52□□□□□ -0.73
CPNE3-201ENST00000517354 RHPN1Q8TCX5 695 aa10.52□□□□□ -0.73
CPNE3-201ENST00000517354 PATL2C9JE40 543 aaKnown RBP10.51□□□□□ -0.73
CPNE3-201ENST00000517354 H7C1W4 665 aa10.51□□□□□ -0.73
CPNE3-201ENST00000517354 HIRAP54198 1017 aaPredicted RBP10.51□□□□□ -0.73
CPNE3-201ENST00000517354 ZNF295-AS1Q8N0V1 137 aa10.51□□□□□ -0.73
CPNE3-201ENST00000517354 COL26A1Q96A83 441 aa10.51□□□□□ -0.73
CPNE3-201ENST00000517354 EFHC2Q5JST6 749 aa10.5□□□□□ -0.73
CPNE3-201ENST00000517354 ANKIB1Q9P2G1 1089 aa10.5□□□□□ -0.73
CPNE3-201ENST00000517354 HIF1AQ16665 826 aa10.49□□□□□ -0.73
CPNE3-201ENST00000517354 RUBCNLQ9H714 662 aa10.49□□□□□ -0.73
CPNE3-201ENST00000517354 SENP3-EIF4A1A0A087X0R7 540 aa10.48□□□□□ -0.73
CPNE3-201ENST00000517354 ABL1P00519 1130 aa10.48□□□□□ -0.73
CPNE3-201ENST00000517354 RTN1Q16799 776 aa10.48□□□□□ -0.73
CPNE3-201ENST00000517354 C16orf46Q6P387 395 aa10.48□□□□□ -0.73
CPNE3-201ENST00000517354 FOXR1Q6PIV2 292 aa10.48□□□□□ -0.73
CPNE3-201ENST00000517354 A0A1W2PNR3 127 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 PPFIA3O75145 1194 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 SCNN1AP37088 669 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 KCNA1Q09470 495 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 PHLDB3Q6NSJ2 640 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 NXF1Q9UBU9 619 aaKnown RBP10.47□□□□□ -0.73
CPNE3-201ENST00000517354 SEPT3Q9UH03 358 aa10.47□□□□□ -0.73
CPNE3-201ENST00000517354 GPC6Q9Y625 555 aaPredicted RBP10.47□□□□□ -0.73
CPNE3-201ENST00000517354 C11orf91Q3C1V1 193 aa10.46□□□□□ -0.73
CPNE3-201ENST00000517354 POTEAQ6S8J7 498 aa10.46□□□□□ -0.73
CPNE3-201ENST00000517354 CAPN12Q6ZSI9 719 aa10.46□□□□□ -0.73
CPNE3-201ENST00000517354 GTF3C2Q8WUA4 911 aaPredicted RBP10.46□□□□□ -0.73
CPNE3-201ENST00000517354 GMCL1Q96IK5 515 aa10.46□□□□□ -0.73
CPNE3-201ENST00000517354 ZIC5Q96T25 663 aa10.46□□□□□ -0.73
CPNE3-201ENST00000517354 NUCKS1Q9H1E3 243 aaKnown RBP10.46□□□□□ -0.73
CPNE3-201ENST00000517354 CDC14CA4D256 554 aa10.45□□□□□ -0.74
CPNE3-201ENST00000517354 ITGA6P23229 1130 aa10.45□□□□□ -0.74
CPNE3-201ENST00000517354 LRRC69Q6ZNQ3 347 aa10.45□□□□□ -0.74
CPNE3-201ENST00000517354 SLC16A10Q8TF71 515 aa10.45□□□□□ -0.74
CPNE3-201ENST00000517354 DGKZQ13574 1117 aa10.44□□□□□ -0.74
CPNE3-201ENST00000517354 LBRQ14739 615 aaKnown RBP10.44□□□□□ -0.74
CPNE3-201ENST00000517354 COX20Q5RI15 118 aa10.44□□□□□ -0.74
CPNE3-201ENST00000517354 SV2AQ7L0J3 742 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms