RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 USP16Q9Y5T5 823 aa27.04■■□□□ 1.92
LSM6-207ENST00000515311 C4BP0C0L5 1744 aa27.04■■□□□ 1.92
LSM6-207ENST00000515311 CACNA1FO60840 1977 aa27.03■■□□□ 1.92
LSM6-207ENST00000515311 CYP19A1P11511 503 aaPredicted RBP27.03■■□□□ 1.92
LSM6-207ENST00000515311 HDGFL1Q5TGJ6 251 aa27.03■■□□□ 1.92
LSM6-207ENST00000515311 NUP188Q5SRE5 1749 aa27.02■■□□□ 1.92
LSM6-207ENST00000515311 ERBB4Q15303 1308 aa27.02■■□□□ 1.92
LSM6-207ENST00000515311 MYH14Q7Z406 1995 aaKnown RBP27.01■■□□□ 1.91
LSM6-207ENST00000515311 KCNQ4P56696 695 aa27.01■■□□□ 1.91
LSM6-207ENST00000515311 EZH2Q15910 746 aaKnown RBP27.01■■□□□ 1.91
LSM6-207ENST00000515311 DEFB132Q7Z7B7 95 aa27.01■■□□□ 1.91
LSM6-207ENST00000515311 LINC00116Q8NCU8 138 aa27.01■■□□□ 1.91
LSM6-207ENST00000515311 CNTNAP4Q9C0A0 1308 aa27■■□□□ 1.91
LSM6-207ENST00000515311 CCDC30Q5VVM6 783 aa27■■□□□ 1.91
LSM6-207ENST00000515311 EIF2S2P20042 333 aaKnown RBP26.99■■□□□ 1.91
LSM6-207ENST00000515311 RC3H1Q5TC82 1133 aaKnown RBP26.99■■□□□ 1.91
LSM6-207ENST00000515311 CCDC87Q9NVE4 849 aa26.98■■□□□ 1.91
LSM6-207ENST00000515311 CRKLP46109 303 aaKnown RBP26.97■■□□□ 1.91
LSM6-207ENST00000515311 ALDH1L2Q3SY69 923 aa26.96■■□□□ 1.91
LSM6-207ENST00000515311 INTS5Q6P9B9 1019 aaKnown RBP26.96■■□□□ 1.91
LSM6-207ENST00000515311 DBF4Q9UBU7 674 aaPredicted RBP26.96■■□□□ 1.91
LSM6-207ENST00000515311 A1BGP04217 495 aa26.95■■□□□ 1.9
LSM6-207ENST00000515311 NECTIN2Q92692 538 aa26.95■■□□□ 1.9
LSM6-207ENST00000515311 STK31Q9BXU1 1019 aa26.95■■□□□ 1.9
LSM6-207ENST00000515311 DDX21Q9NR30 783 aaKnown RBP eCLIP26.95■■□□□ 1.9
LSM6-207ENST00000515311 CHPF2Q9P2E5 772 aa26.95■■□□□ 1.9
LSM6-207ENST00000515311 UBR3Q6ZT12 1888 aa26.94■■□□□ 1.9
LSM6-207ENST00000515311 RARSP54136 660 aaKnown RBP26.94■■□□□ 1.9
LSM6-207ENST00000515311 PDIA6Q15084 440 aa26.93■■□□□ 1.9
LSM6-207ENST00000515311 NBPF26B4DH59 902 aa26.92■■□□□ 1.9
LSM6-207ENST00000515311 NBPF14Q5TI25 921 aa26.92■■□□□ 1.9
LSM6-207ENST00000515311 NBPF10Q6P3W6 841 aaKnown RBP26.92■■□□□ 1.9
LSM6-207ENST00000515311 NBPF15Q8N660 670 aa26.92■■□□□ 1.9
LSM6-207ENST00000515311 SSH1Q8WYL5 1049 aa26.92■■□□□ 1.9
LSM6-207ENST00000515311 ZBTB1Q9Y2K1 713 aa26.92■■□□□ 1.9
LSM6-207ENST00000515311 HYPKQ9NX55 129 aa26.91■■□□□ 1.9
LSM6-207ENST00000515311 RCAN3Q9UKA8 241 aa26.91■■□□□ 1.9
LSM6-207ENST00000515311 QSER1Q2KHR3 1735 aa26.9■■□□□ 1.9
LSM6-207ENST00000515311 IL6STP40189 918 aaPredicted RBP26.9■■□□□ 1.9
LSM6-207ENST00000515311 AKT1S1Q96B36 256 aa26.9■■□□□ 1.9
LSM6-207ENST00000515311 AK7Q96M32 723 aa26.9■■□□□ 1.9
LSM6-207ENST00000515311 TUBGCP6Q96RT7 1819 aa26.9■■□□□ 1.9
LSM6-207ENST00000515311 TCERG1O14776 1098 aaKnown RBP26.89■■□□□ 1.9
LSM6-207ENST00000515311 SLC4A2P04920 1241 aa26.89■■□□□ 1.9
LSM6-207ENST00000515311 CANXP27824 592 aaKnown RBP26.89■■□□□ 1.9
LSM6-207ENST00000515311 BRPF1P55201 1214 aaPredicted RBP26.89■■□□□ 1.9
LSM6-207ENST00000515311 PROSER3Q2NL68 480 aa26.89■■□□□ 1.9
LSM6-207ENST00000515311 LRP10Q7Z4F1 713 aa26.89■■□□□ 1.9
LSM6-207ENST00000515311 SMC4Q9NTJ3 1288 aa26.89■■□□□ 1.9
LSM6-207ENST00000515311 GNPATO15228 680 aa26.88■■□□□ 1.89
LSM6-207ENST00000515311 RPS6KA4O75676 772 aa26.88■■□□□ 1.89
LSM6-207ENST00000515311 MYL6BP14649 208 aa26.87■■□□□ 1.89
LSM6-207ENST00000515311 PIP4K2AP48426 406 aaPredicted RBP26.87■■□□□ 1.89
LSM6-207ENST00000515311 EIF5P55010 431 aaKnown RBP26.87■■□□□ 1.89
LSM6-207ENST00000515311 MRPL50Q8N5N7 158 aaKnown RBP26.87■■□□□ 1.89
LSM6-207ENST00000515311 ANXA1P04083 346 aa26.86■■□□□ 1.89
LSM6-207ENST00000515311 ZNF827Q17R98 1081 aa26.86■■□□□ 1.89
LSM6-207ENST00000515311 BCL2L13Q9BXK5 485 aa26.86■■□□□ 1.89
LSM6-207ENST00000515311 RTCBQ9Y3I0 505 aaKnown RBP26.86■■□□□ 1.89
LSM6-207ENST00000515311 C4AP0C0L4 1744 aa26.85■■□□□ 1.89
LSM6-207ENST00000515311 CENPBP07199 599 aaPredicted RBP26.85■■□□□ 1.89
LSM6-207ENST00000515311 COL15A1P39059 1388 aa26.84■■□□□ 1.89
LSM6-207ENST00000515311 ADRA2BP18089 450 aa26.84■■□□□ 1.89
LSM6-207ENST00000515311 STK32BQ9NY57 414 aa26.84■■□□□ 1.89
LSM6-207ENST00000515311 KIF16BQ96L93 1317 aa26.84■■□□□ 1.89
LSM6-207ENST00000515311 SSFA2P28290 1259 aa26.83■■□□□ 1.89
LSM6-207ENST00000515311 NPM2Q86SE8 214 aaKnown RBP26.83■■□□□ 1.89
LSM6-207ENST00000515311 ANO8Q9HCE9 1232 aaPredicted RBP26.83■■□□□ 1.89
LSM6-207ENST00000515311 A0A087WZG4 1122 aa26.82■■□□□ 1.88
LSM6-207ENST00000515311 BCAR3O75815 825 aa26.82■■□□□ 1.88
LSM6-207ENST00000515311 FLIIQ13045 1269 aa26.82■■□□□ 1.88
LSM6-207ENST00000515311 SLC15A2Q16348 729 aa26.82■■□□□ 1.88
LSM6-207ENST00000515311 TFCP2L1Q9NZI6 479 aa26.82■■□□□ 1.88
LSM6-207ENST00000515311 BCORQ6W2J9 1755 aa26.81■■□□□ 1.88
LSM6-207ENST00000515311 G2E3Q7L622 706 aa26.81■■□□□ 1.88
LSM6-207ENST00000515311 XAGE3Q8WTP9 111 aa26.81■■□□□ 1.88
LSM6-207ENST00000515311 PHAXQ9H814 394 aaKnown RBP26.81■■□□□ 1.88
LSM6-207ENST00000515311 SCN7AQ01118 1682 aa26.8■■□□□ 1.88
LSM6-207ENST00000515311 COPS6Q7L5N1 327 aa26.8■■□□□ 1.88
LSM6-207ENST00000515311 AMIGO3Q86WK7 504 aa26.8■■□□□ 1.88
LSM6-207ENST00000515311 FLAD1Q8NFF5 587 aa26.8■■□□□ 1.88
LSM6-207ENST00000515311 ZNF330Q9Y3S2 320 aaPredicted RBP26.8■■□□□ 1.88
LSM6-207ENST00000515311 PTPRCP08575 1304 aa26.8■■□□□ 1.88
LSM6-207ENST00000515311 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.79■■□□□ 1.88
LSM6-207ENST00000515311 TRAPPC3LQ5T215 181 aa26.79■■□□□ 1.88
LSM6-207ENST00000515311 ARFGEF2Q9Y6D5 1785 aa26.79■■□□□ 1.88
LSM6-207ENST00000515311 DDX58O95786 925 aaKnown RBP26.77■■□□□ 1.88
LSM6-207ENST00000515311 KIF6Q6ZMV9 814 aa26.77■■□□□ 1.88
LSM6-207ENST00000515311 DZIP3Q86Y13 1208 aaKnown RBP26.77■■□□□ 1.88
LSM6-207ENST00000515311 ARHGAP45Q92619 1136 aa26.77■■□□□ 1.88
LSM6-207ENST00000515311 SOCS7O14512 581 aa26.76■■□□□ 1.87
LSM6-207ENST00000515311 IPO8O15397 1037 aaKnown RBP26.76■■□□□ 1.87
LSM6-207ENST00000515311 PHF14O94880 888 aa26.76■■□□□ 1.87
LSM6-207ENST00000515311 AIMP1Q12904 312 aaKnown RBP26.76■■□□□ 1.87
LSM6-207ENST00000515311 FKBP5Q13451 457 aaPredicted RBP26.76■■□□□ 1.87
LSM6-207ENST00000515311 TTLL7Q6ZT98 887 aa26.76■■□□□ 1.87
LSM6-207ENST00000515311 ARHGEF1Q92888 912 aaKnown RBP26.76■■□□□ 1.87
LSM6-207ENST00000515311 NOB1Q9ULX3 412 aaKnown RBP26.76■■□□□ 1.87
LSM6-207ENST00000515311 MAP3K15Q6ZN16 1313 aa26.75■■□□□ 1.87
LSM6-207ENST00000515311 PNPLA7Q6ZV29 1317 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms