RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
CCL28-204ENST00000514421 CCDC87Q9NVE4 849 aa10.85□□□□□ -0.67
CCL28-204ENST00000514421 TSPYL4Q9UJ04 414 aa10.85□□□□□ -0.67
CCL28-204ENST00000514421 LY75O60449 1722 aa10.84□□□□□ -0.67
CCL28-204ENST00000514421 RFC4P35249 363 aa10.84□□□□□ -0.67
CCL28-204ENST00000514421 CALD1Q05682 793 aaKnown RBP10.84□□□□□ -0.67
CCL28-204ENST00000514421 USP16Q9Y5T5 823 aa10.84□□□□□ -0.67
CCL28-204ENST00000514421 SCN11AQ9UI33 1791 aa10.84□□□□□ -0.67
CCL28-204ENST00000514421 ADAMTS7Q9UKP4 1686 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 GIGYF1O75420 1035 aaPredicted RBP10.83□□□□□ -0.68
CCL28-204ENST00000514421 CANXP27824 592 aaKnown RBP10.83□□□□□ -0.68
CCL28-204ENST00000514421 POLD1P28340 1107 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 PTGER2P43116 358 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 CCDC27Q2M243 656 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 CFAP44Q96MT7 982 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 SGIP1Q9BQI5 828 aa10.83□□□□□ -0.68
CCL28-204ENST00000514421 PPP1R1BQ9UD71 204 aaPredicted RBP10.83□□□□□ -0.68
CCL28-204ENST00000514421 LAS1LQ9Y4W2 734 aaKnown RBP10.83□□□□□ -0.68
CCL28-204ENST00000514421 SRCAPQ6ZRS2 3230 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 A0A087WZG4 1122 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 A1BGP04217 495 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 IL6STP40189 918 aaPredicted RBP10.82□□□□□ -0.68
CCL28-204ENST00000514421 EIF5P55010 431 aaKnown RBP10.82□□□□□ -0.68
CCL28-204ENST00000514421 GNAI1P63096 354 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 NPM2Q86SE8 214 aaKnown RBP10.82□□□□□ -0.68
CCL28-204ENST00000514421 NLGN1Q8N2Q7 840 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 NGEFQ8N5V2 710 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 ZBTB1Q9Y2K1 713 aa10.82□□□□□ -0.68
CCL28-204ENST00000514421 PAPPAQ13219 1627 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 PRAMEF22A3QJZ6 481 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 ZPR1O75312 459 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 ZNF853P0CG23 659 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 WWC1Q8IX03 1113 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 ARXQ96QS3 562 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 IFT57Q9NWB7 429 aa10.81□□□□□ -0.68
CCL28-204ENST00000514421 SOS1Q07889 1333 aaPredicted RBP10.81□□□□□ -0.68
CCL28-204ENST00000514421 KCPQ6ZWJ8 1503 aa10.8□□□□□ -0.68
CCL28-204ENST00000514421 SENP3-EIF4A1A0A087X0R7 540 aa10.8□□□□□ -0.68
CCL28-204ENST00000514421 NARFQ9UHQ1 456 aa10.8□□□□□ -0.68
CCL28-204ENST00000514421 SALL2Q9Y467 1007 aaPredicted RBP10.8□□□□□ -0.68
CCL28-204ENST00000514421 GYS1P13807 737 aa10.79□□□□□ -0.68
CCL28-204ENST00000514421 MSL1Q68DK7 614 aa10.79□□□□□ -0.68
CCL28-204ENST00000514421 WDR63Q8IWG1 891 aa10.79□□□□□ -0.68
CCL28-204ENST00000514421 MBIPQ9NS73 344 aa10.79□□□□□ -0.68
CCL28-204ENST00000514421 EIF2S2P20042 333 aaKnown RBP10.78□□□□□ -0.68
CCL28-204ENST00000514421 SRP68Q9UHB9 627 aaKnown RBP10.78□□□□□ -0.68
CCL28-204ENST00000514421 SUPT16HQ9Y5B9 1047 aaKnown RBP10.78□□□□□ -0.68
CCL28-204ENST00000514421 U3KPZ7 1027 aaPredicted RBP10.78□□□□□ -0.68
CCL28-204ENST00000514421 IL16Q14005 1332 aa10.78□□□□□ -0.68
CCL28-204ENST00000514421 C4BP0C0L5 1744 aa10.78□□□□□ -0.68
CCL28-204ENST00000514421 ZNF831Q5JPB2 1677 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 NBPF26B4DH59 902 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 USPL1Q5W0Q7 1092 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 NBPF10Q6P3W6 841 aaKnown RBP10.77□□□□□ -0.69
CCL28-204ENST00000514421 NBPF15Q8N660 670 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 TBC1D2BQ9UPU7 963 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 ZNF330Q9Y3S2 320 aaPredicted RBP10.77□□□□□ -0.69
CCL28-204ENST00000514421 RNF123Q5XPI4 1314 aa10.77□□□□□ -0.69
CCL28-204ENST00000514421 USP42Q9H9J4 1324 aaKnown RBP10.77□□□□□ -0.69
CCL28-204ENST00000514421 MMP10P09238 476 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 HOXB7P09629 217 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 TM4SF1P30408 202 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 PIP4K2AP48426 406 aaPredicted RBP10.76□□□□□ -0.69
CCL28-204ENST00000514421 FKBP8Q14318 412 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 DUSP27Q5VZP5 1158 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 ERICH6BQ5W0A0 696 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 SYT17Q9BSW7 474 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 CHMP4AQ9BY43 222 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 FHDC1Q9C0D6 1143 aaPredicted RBP10.76□□□□□ -0.69
CCL28-204ENST00000514421 SPINK5Q9NQ38 1064 aaPredicted RBP10.76□□□□□ -0.69
CCL28-204ENST00000514421 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 ERBB4Q15303 1308 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 C5P01031 1676 aa10.76□□□□□ -0.69
CCL28-204ENST00000514421 MYH14Q7Z406 1995 aaKnown RBP10.76□□□□□ -0.69
CCL28-204ENST00000514421 KRT24Q2M2I5 525 aa10.75□□□□□ -0.69
CCL28-204ENST00000514421 DZIP3Q86Y13 1208 aaKnown RBP10.75□□□□□ -0.69
CCL28-204ENST00000514421 BCL2L12Q9HB09 334 aa10.75□□□□□ -0.69
CCL28-204ENST00000514421 CD2APQ9Y5K6 639 aa10.75□□□□□ -0.69
CCL28-204ENST00000514421 PARP3Q9Y6F1 533 aa10.75□□□□□ -0.69
CCL28-204ENST00000514421 COL15A1P39059 1388 aa10.75□□□□□ -0.69
CCL28-204ENST00000514421 DLG5Q8TDM6 1919 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 ELL2O00472 640 aaPredicted RBP10.74□□□□□ -0.69
CCL28-204ENST00000514421 CAMTA2O94983 1202 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 MYL6BP14649 208 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 PDIA6Q15084 440 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 CLEC4GQ6UXB4 293 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 C8orf58Q8NAV2 365 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 SIPA1L3O60292 1781 aaPredicted RBP10.74□□□□□ -0.69
CCL28-204ENST00000514421 CASZ1Q86V15 1759 aa10.74□□□□□ -0.69
CCL28-204ENST00000514421 RGL2O15211 777 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 GOLGA2Q08379 1002 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 NFIXQ14938 502 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 HDGFL1Q5TGJ6 251 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 KLHL34Q8N239 644 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 NECTIN2Q92692 538 aa10.73□□□□□ -0.69
CCL28-204ENST00000514421 DDX21Q9NR30 783 aaKnown RBP eCLIP10.73□□□□□ -0.69
CCL28-204ENST00000514421 DBF4Q9UBU7 674 aaPredicted RBP10.73□□□□□ -0.69
CCL28-204ENST00000514421 VIRMAQ69YN4 1812 aaKnown RBP10.72□□□□□ -0.69
CCL28-204ENST00000514421 ERVV-1B6SEH8 477 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 BICDL1Q6ZP65 573 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms