RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 PARP3Q9Y6F1 533 aa17.48■□□□□ 0.39
PDLIM3-210ENST00000514308 CANXP27824 592 aaKnown RBP17.47■□□□□ 0.39
PDLIM3-210ENST00000514308 DCTN1Q14203 1278 aa17.47■□□□□ 0.39
PDLIM3-210ENST00000514308 PLEKHF1Q96S99 279 aa17.47■□□□□ 0.39
PDLIM3-210ENST00000514308 VIRMAQ69YN4 1812 aaKnown RBP17.47■□□□□ 0.39
PDLIM3-210ENST00000514308 UBR2Q8IWV8 1755 aa17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 GOLGB1Q14789 3259 aaKnown RBP17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 COL15A1P39059 1388 aa17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 CENPBP07199 599 aaPredicted RBP17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 FKBP8Q14318 412 aa17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 NFE2L2Q16236 605 aa17.46■□□□□ 0.39
PDLIM3-210ENST00000514308 YBX3P16989 372 aaKnown RBP eCLIP17.45■□□□□ 0.38
PDLIM3-210ENST00000514308 TAF7Q15545 349 aaPredicted RBP17.45■□□□□ 0.38
PDLIM3-210ENST00000514308 NPM2Q86SE8 214 aaKnown RBP17.45■□□□□ 0.38
PDLIM3-210ENST00000514308 NARFQ9UHQ1 456 aa17.45■□□□□ 0.38
PDLIM3-210ENST00000514308 A0A087WZG4 1122 aa17.44■□□□□ 0.38
PDLIM3-210ENST00000514308 KCNQ3O43525 872 aa17.44■□□□□ 0.38
PDLIM3-210ENST00000514308 USPL1Q5W0Q7 1092 aa17.44■□□□□ 0.38
PDLIM3-210ENST00000514308 C4AP0C0L4 1744 aa17.44■□□□□ 0.38
PDLIM3-210ENST00000514308 SIPA1L3O60292 1781 aaPredicted RBP17.43■□□□□ 0.38
PDLIM3-210ENST00000514308 SNRPA1P09661 255 aaKnown RBP17.43■□□□□ 0.38
PDLIM3-210ENST00000514308 TGFB2P61812 414 aa17.43■□□□□ 0.38
PDLIM3-210ENST00000514308 C10orf71Q711Q0 1435 aa17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 IL6STP40189 918 aaPredicted RBP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 EIF5P55010 431 aaKnown RBP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 WDR43Q15061 677 aaKnown RBP eCLIP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 PNISRQ8TF01 805 aaKnown RBP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 PRKRIP1Q9H875 184 aaPredicted RBP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 ZNF330Q9Y3S2 320 aaPredicted RBP17.42■□□□□ 0.38
PDLIM3-210ENST00000514308 DDR1Q08345 913 aa17.41■□□□□ 0.38
PDLIM3-210ENST00000514308 CCER2I3L3R5 266 aa17.4■□□□□ 0.38
PDLIM3-210ENST00000514308 ANP32CO43423 234 aa17.4■□□□□ 0.38
PDLIM3-210ENST00000514308 A1BGP04217 495 aa17.4■□□□□ 0.38
PDLIM3-210ENST00000514308 TM4SF1P30408 202 aa17.4■□□□□ 0.38
PDLIM3-210ENST00000514308 WWC3Q9ULE0 1092 aa17.4■□□□□ 0.38
PDLIM3-210ENST00000514308 PXDNLA1KZ92 1463 aa17.39■□□□□ 0.37
PDLIM3-210ENST00000514308 POLRMTO00411 1230 aaKnown RBP17.39■□□□□ 0.37
PDLIM3-210ENST00000514308 RIPK4P57078 832 aa17.39■□□□□ 0.37
PDLIM3-210ENST00000514308 NFIXQ14938 502 aa17.39■□□□□ 0.37
PDLIM3-210ENST00000514308 USP16Q9Y5T5 823 aa17.39■□□□□ 0.37
PDLIM3-210ENST00000514308 A0A0G2JLW4 131 aa17.38■□□□□ 0.37
PDLIM3-210ENST00000514308 LMOD3Q0VAK6 560 aa17.38■□□□□ 0.37
PDLIM3-210ENST00000514308 THUMPD2Q9BTF0 503 aaKnown RBP17.38■□□□□ 0.37
PDLIM3-210ENST00000514308 MIS18AQ9NYP9 233 aa17.38■□□□□ 0.37
PDLIM3-210ENST00000514308 ZNF784Q8NCA9 323 aaPredicted RBP17.37■□□□□ 0.37
PDLIM3-210ENST00000514308 BCL2L12Q9HB09 334 aa17.37■□□□□ 0.37
PDLIM3-210ENST00000514308 TBC1D2BQ9UPU7 963 aa17.37■□□□□ 0.37
PDLIM3-210ENST00000514308 PRAMEF22A3QJZ6 481 aa17.36■□□□□ 0.37
PDLIM3-210ENST00000514308 DPEP1P16444 411 aa17.36■□□□□ 0.37
PDLIM3-210ENST00000514308 TMPOP42166 694 aaKnown RBP17.36■□□□□ 0.37
PDLIM3-210ENST00000514308 CCDC146Q8IYE0 955 aa17.35■□□□□ 0.37
PDLIM3-210ENST00000514308 RUNDC1Q96C34 613 aa17.35■□□□□ 0.37
PDLIM3-210ENST00000514308 BCS1LQ9Y276 419 aa17.35■□□□□ 0.37
PDLIM3-210ENST00000514308 SERPINB2P05120 415 aa17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 CHD4Q14839 1912 aa17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 BICDL1Q6ZP65 573 aa17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 DZIP3Q86Y13 1208 aaKnown RBP17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 KIF13BQ9NQT8 1826 aa17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 ADAMTS8Q9UP79 889 aa17.34■□□□□ 0.37
PDLIM3-210ENST00000514308 PIP4K2AP48426 406 aaPredicted RBP17.33■□□□□ 0.36
PDLIM3-210ENST00000514308 EIF4A1P60842 406 aaKnown RBP17.33■□□□□ 0.36
PDLIM3-210ENST00000514308 PIAS4Q8N2W9 510 aaPredicted RBP17.33■□□□□ 0.36
PDLIM3-210ENST00000514308 PIM2Q9P1W9 311 aa17.33■□□□□ 0.36
PDLIM3-210ENST00000514308 TSPYL4Q9UJ04 414 aa17.33■□□□□ 0.36
PDLIM3-210ENST00000514308 GIGYF1O75420 1035 aaPredicted RBP17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 CAMTA2O94983 1202 aa17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 NEUROD2Q15784 382 aa17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 TBC1D9BQ66K14 1250 aa17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 BABAM1Q9NWV8 329 aa17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 ZNF652Q9Y2D9 606 aa17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 RRP7AQ9Y3A4 280 aaKnown RBP17.32■□□□□ 0.36
PDLIM3-210ENST00000514308 CARMIL3Q8ND23 1372 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 NBPF26B4DH59 902 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 KCNA3P22001 575 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 NBPF10Q6P3W6 841 aaKnown RBP17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 NBPF15Q8N660 670 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 SETDB2Q96T68 719 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 DLG5Q8TDM6 1919 aa17.31■□□□□ 0.36
PDLIM3-210ENST00000514308 CHRNA5P30532 468 aa17.3■□□□□ 0.36
PDLIM3-210ENST00000514308 DALRD3Q5D0E6 543 aaKnown RBP17.3■□□□□ 0.36
PDLIM3-210ENST00000514308 CLEC4GQ6UXB4 293 aa17.3■□□□□ 0.36
PDLIM3-210ENST00000514308 NPHP1O15259 732 aa17.29■□□□□ 0.36
PDLIM3-210ENST00000514308 KIAA1551Q9HCM1 1747 aa17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 RGL2O15211 777 aa17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 ARHGAP27Q6ZUM4 889 aa17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 SCN7AQ01118 1682 aa17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 KDM3BQ7LBC6 1761 aa17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 N4BP2Q86UW6 1770 aaPredicted RBP17.28■□□□□ 0.36
PDLIM3-210ENST00000514308 H0YIN7 160 aa17.27■□□□□ 0.36
PDLIM3-210ENST00000514308 CNBD1Q8NA66 436 aa17.27■□□□□ 0.36
PDLIM3-210ENST00000514308 YTHDC1Q96MU7 727 aaKnown RBP17.27■□□□□ 0.36
PDLIM3-210ENST00000514308 PRR5LQ6MZQ0 368 aa17.26■□□□□ 0.35
PDLIM3-210ENST00000514308 C2CD5Q86YS7 1000 aa17.26■□□□□ 0.35
PDLIM3-210ENST00000514308 BRIP1Q9BX63 1249 aa17.26■□□□□ 0.35
PDLIM3-210ENST00000514308 TRIM35Q9UPQ4 493 aa17.26■□□□□ 0.35
PDLIM3-210ENST00000514308 PDZRN3Q9UPQ7 1066 aa17.26■□□□□ 0.35
PDLIM3-210ENST00000514308 ERBB4Q15303 1308 aa17.25■□□□□ 0.35
PDLIM3-210ENST00000514308 NRXN2Q9P2S2 1712 aa17.25■□□□□ 0.35
PDLIM3-210ENST00000514308 PDE6BP35913 854 aa17.25■□□□□ 0.35
PDLIM3-210ENST00000514308 ST5P78524 1137 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms