RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CALD1Q05682 793 aaKnown RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 PLEKHO1Q53GL0 409 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 FAM196AQ6ZSG2 479 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 PANK1Q8TE04 598 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 GRPEL1Q9HAV7 217 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 STRN4Q9NRL3 753 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 AXIN2Q9Y2T1 843 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 SENP3-EIF4A1A0A087X0R7 540 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 EXOC5O00471 708 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 HTATSF1O43719 755 aaKnown RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 FCHSD2O94868 740 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 NAP1L5Q96NT1 182 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 ABCC4O15439 1325 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 OFD1O75665 1012 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 DDB1Q16531 1140 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 TNS1Q9HBL0 1735 aaKnown RBP9.28□□□□□ -0.92
CLIP1-205ENST00000514271 ZNF853P0CG23 659 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 KRT27Q7Z3Y8 459 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 RUNDC1Q96C34 613 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 SCN11AQ9UI33 1791 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 SEPT12Q8IYM1 358 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 GAS2L2Q8NHY3 880 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 CHMP5Q9NZZ3 219 aa9.28□□□□□ -0.92
CLIP1-205ENST00000514271 SALL3Q9BXA9 1300 aa9.27□□□□□ -0.92
CLIP1-205ENST00000514271 GTF2F1P35269 517 aaKnown RBP eCLIP9.27□□□□□ -0.93
CLIP1-205ENST00000514271 HSP90AB2PQ58FF8 381 aa9.27□□□□□ -0.93
CLIP1-205ENST00000514271 MRC1P22897 1456 aa9.27□□□□□ -0.93
CLIP1-205ENST00000514271 ZBTB7CA1YPR0 619 aa9.27□□□□□ -0.93
CLIP1-205ENST00000514271 NKX1-1Q15270 411 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-205ENST00000514271 SIRT2Q8IXJ6 389 aa9.27□□□□□ -0.93
CLIP1-205ENST00000514271 TRAK2O60296 914 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 MEGF6O75095 1541 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 BMP2KLQ5H9B9 411 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 ZCRB1Q8TBF4 217 aaKnown RBP9.26□□□□□ -0.93
CLIP1-205ENST00000514271 ZMYND15Q9H091 742 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 ESPNB1AK53 854 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 LMOD3Q0VAK6 560 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 TNPO1Q92973 898 aaKnown RBP9.26□□□□□ -0.93
CLIP1-205ENST00000514271 EYA1Q99502 592 aa9.26□□□□□ -0.93
CLIP1-205ENST00000514271 SOX12O15370 315 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 TPM2P07951 284 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 QSER1Q2KHR3 1735 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 RREB1Q92766 1687 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 DOT1LQ8TEK3 1739 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 NBPF6Q5VWK0 638 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 NBPF4Q96M43 638 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 ZDHHC9Q9Y397 364 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 TRIM27P14373 513 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 IFNL2Q8IZJ0 200 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 PDCL3Q9H2J4 239 aa9.25□□□□□ -0.93
CLIP1-205ENST00000514271 PAPPAQ13219 1627 aa9.24□□□□□ -0.93
CLIP1-205ENST00000514271 FAM98CQ17RN3 349 aaKnown RBP9.24□□□□□ -0.93
CLIP1-205ENST00000514271 LAMA4Q16363 1823 aa9.24□□□□□ -0.93
CLIP1-205ENST00000514271 BABAM1Q9NWV8 329 aa9.24□□□□□ -0.93
CLIP1-205ENST00000514271 WDR43Q15061 677 aaKnown RBP eCLIP9.24□□□□□ -0.93
CLIP1-205ENST00000514271 NOL7Q9UMY1 257 aaKnown RBP9.24□□□□□ -0.93
CLIP1-205ENST00000514271 LY75O60449 1722 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 ERVV-2B6SEH9 535 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 ALDH1L2Q3SY69 923 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 AKAP4Q5JQC9 854 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 C22orf23Q9BZE7 217 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 COG6Q9Y2V7 657 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 ITGB4P16144 1822 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 GOLGA6L3A6NEY3 463 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 KLHL40Q2TBA0 621 aa9.23□□□□□ -0.93
CLIP1-205ENST00000514271 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 ZBTB7BO15156 539 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-205ENST00000514271 C1orf141Q5JVX7 400 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 ARHGAP45Q92619 1136 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 SMARCC1Q92922 1105 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-205ENST00000514271 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-205ENST00000514271 SF3B2Q13435 895 aaKnown RBP9.22□□□□□ -0.93
CLIP1-205ENST00000514271 BECN1Q14457 450 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 CCDC146Q8IYE0 955 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 DCAF5Q96JK2 942 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 TNNT2P45379 298 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-205ENST00000514271 LMBRD1Q9NUN5 540 aa9.22□□□□□ -0.93
CLIP1-205ENST00000514271 NPM3O75607 178 aaKnown RBP9.21□□□□□ -0.93
CLIP1-205ENST00000514271 LTV1Q96GA3 475 aaPredicted RBP9.21□□□□□ -0.93
CLIP1-205ENST00000514271 BTAF1O14981 1849 aa9.21□□□□□ -0.93
CLIP1-205ENST00000514271 MAP3K5Q99683 1374 aa9.21□□□□□ -0.94
CLIP1-205ENST00000514271 ZNF592Q92610 1267 aa9.21□□□□□ -0.94
CLIP1-205ENST00000514271 ZNF428Q96B54 188 aa9.21□□□□□ -0.94
CLIP1-205ENST00000514271 TOGARAM1Q9Y4F4 1720 aa9.21□□□□□ -0.94
CLIP1-205ENST00000514271 SULT6B1Q6IMI4 303 aa9.21□□□□□ -0.94
CLIP1-205ENST00000514271 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.21□□□□□ -0.94
CLIP1-205ENST00000514271 PXDNLA1KZ92 1463 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 C5P01031 1676 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 ECM29Q5VYK3 1845 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 SOCS7O14512 581 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 PLSCR1O15162 318 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 PHKG2P15735 406 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 BAG6P46379 1132 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 RBM10P98175 930 aaKnown RBP9.2□□□□□ -0.94
CLIP1-205ENST00000514271 FAM53CQ9NYF3 392 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 RPAP1Q9BWH6 1393 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-205ENST00000514271 UBR2Q8IWV8 1755 aa9.2□□□□□ -0.94
CLIP1-205ENST00000514271 A0A0G2JS52 829 aa9.19□□□□□ -0.94
CLIP1-205ENST00000514271 GSPT1P15170 499 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms