RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 TTC21BQ7Z4L5 1316 aa10.19□□□□□ -0.78
USP46-208ENST00000512656 R3HDM1Q15032 1099 aaKnown RBP10.19□□□□□ -0.78
USP46-208ENST00000512656 NBPF14Q5TI25 921 aa10.19□□□□□ -0.78
USP46-208ENST00000512656 TOM1L2Q6ZVM7 507 aa10.19□□□□□ -0.78
USP46-208ENST00000512656 EYA1Q99502 592 aa10.19□□□□□ -0.78
USP46-208ENST00000512656 CDCA7Q9BWT1 371 aaPredicted RBP10.19□□□□□ -0.78
USP46-208ENST00000512656 SLIT3O75094 1523 aa10.18□□□□□ -0.78
USP46-208ENST00000512656 LRP5O75197 1615 aa10.18□□□□□ -0.78
USP46-208ENST00000512656 KTN1Q86UP2 1357 aaKnown RBP10.17□□□□□ -0.78
USP46-208ENST00000512656 SBNO2Q9Y2G9 1366 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 WDR17Q8IZU2 1322 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 SLC4A3P48751 1232 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 DDB1Q16531 1140 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 ARHGEF25Q86VW2 580 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 SLF2Q8IX21 1173 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 CARD11Q9BXL7 1154 aa10.17□□□□□ -0.78
USP46-208ENST00000512656 OVOS2A0A0G2JMS6 1433 aa10.16□□□□□ -0.78
USP46-208ENST00000512656 OVOS2A0A0J9YW53 1432 aa10.16□□□□□ -0.78
USP46-208ENST00000512656 CPSF1Q10570 1443 aaKnown RBP10.16□□□□□ -0.78
USP46-208ENST00000512656 OVOS2Q6IE36 1432 aa10.16□□□□□ -0.78
USP46-208ENST00000512656 TNS1Q9HBL0 1735 aaKnown RBP10.16□□□□□ -0.78
USP46-208ENST00000512656 SEMA3EO15041 775 aa10.16□□□□□ -0.78
USP46-208ENST00000512656 CSB-PGBD3P0DP91 1061 aa10.16□□□□□ -0.78
USP46-208ENST00000512656 TONSLQ96HA7 1378 aa10.15□□□□□ -0.78
USP46-208ENST00000512656 TJAP1Q5JTD0 557 aa10.15□□□□□ -0.78
USP46-208ENST00000512656 SMYD5Q6GMV2 418 aa10.15□□□□□ -0.78
USP46-208ENST00000512656 HDGFL2Q7Z4V5 671 aaPredicted RBP10.15□□□□□ -0.78
USP46-208ENST00000512656 CARD10Q9BWT7 1032 aa10.15□□□□□ -0.78
USP46-208ENST00000512656 PARP4Q9UKK3 1724 aaKnown RBP10.15□□□□□ -0.78
USP46-208ENST00000512656 SLC24A1O60721 1099 aa10.14□□□□□ -0.79
USP46-208ENST00000512656 FCHSD2O94868 740 aa10.14□□□□□ -0.79
USP46-208ENST00000512656 SWT1Q5T5J6 900 aaKnown RBP10.14□□□□□ -0.79
USP46-208ENST00000512656 RBM46Q8TBY0 533 aaKnown RBP10.14□□□□□ -0.79
USP46-208ENST00000512656 TMC1Q8TDI8 760 aa10.14□□□□□ -0.79
USP46-208ENST00000512656 TERF2IPQ9NYB0 399 aa10.14□□□□□ -0.79
USP46-208ENST00000512656 PIK3C2AO00443 1686 aa10.14□□□□□ -0.79
USP46-208ENST00000512656 TESPA1A2RU30 521 aaPredicted RBP10.13□□□□□ -0.79
USP46-208ENST00000512656 EXOC5O00471 708 aa10.13□□□□□ -0.79
USP46-208ENST00000512656 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.13□□□□□ -0.79
USP46-208ENST00000512656 PUS7Q96PZ0 661 aaKnown RBP10.13□□□□□ -0.79
USP46-208ENST00000512656 IL21Q9HBE4 155 aa10.13□□□□□ -0.79
USP46-208ENST00000512656 USP31Q70CQ4 1352 aa10.13□□□□□ -0.79
USP46-208ENST00000512656 CCDC7Q96M83 1385 aa10.13□□□□□ -0.79
USP46-208ENST00000512656 PLSCR1O15162 318 aa10.12□□□□□ -0.79
USP46-208ENST00000512656 DNAJB2P25686 324 aa10.12□□□□□ -0.79
USP46-208ENST00000512656 PRR14Q9BWN1 585 aa10.12□□□□□ -0.79
USP46-208ENST00000512656 ADGRG1Q9Y653 693 aa10.12□□□□□ -0.79
USP46-208ENST00000512656 ABCC6O95255 1503 aa10.12□□□□□ -0.79
USP46-208ENST00000512656 AKAP12Q02952 1782 aa10.11□□□□□ -0.79
USP46-208ENST00000512656 BCL9O00512 1426 aa10.11□□□□□ -0.79
USP46-208ENST00000512656 COL18A1P39060 1754 aa10.11□□□□□ -0.79
USP46-208ENST00000512656 EDC4Q6P2E9 1401 aaKnown RBP10.1□□□□□ -0.79
USP46-208ENST00000512656 RNF40O75150 1001 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 NME9Q86XW9 330 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 MARCH10Q8NA82 808 aaPredicted RBP10.1□□□□□ -0.79
USP46-208ENST00000512656 MTRQ99707 1265 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 SLC12A5Q9H2X9 1139 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 SPON1Q9HCB6 807 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 NFAT5O94916 1531 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 NINLQ9Y2I6 1382 aa10.1□□□□□ -0.79
USP46-208ENST00000512656 RREB1Q92766 1687 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 LRRC37A3O60309 1634 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 APLP1P51693 650 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 HIC1Q14526 733 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 TMEM134Q9H6X4 195 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 NLRP2Q9NX02 1062 aa10.09□□□□□ -0.79
USP46-208ENST00000512656 PPP1R1BQ9UD71 204 aaPredicted RBP10.09□□□□□ -0.79
USP46-208ENST00000512656 MON2Q7Z3U7 1717 aa10.08□□□□□ -0.8
USP46-208ENST00000512656 PEAK1Q9H792 1746 aa10.08□□□□□ -0.8
USP46-208ENST00000512656 KCNQ2O43526 872 aa10.08□□□□□ -0.8
USP46-208ENST00000512656 NUP188Q5SRE5 1749 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 RGPD3A6NKT7 1758 aaPredicted RBP10.07□□□□□ -0.8
USP46-208ENST00000512656 RGPD4Q7Z3J3 1758 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 CD163L1Q9NR16 1453 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 A0A1W2PP64 1363 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 OATP04181 439 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 IL2RBP14784 551 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 ANKRD24Q8TF21 1146 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 IRX2Q9BZI1 471 aaPredicted RBP10.07□□□□□ -0.8
USP46-208ENST00000512656 TNS2Q63HR2 1409 aa10.07□□□□□ -0.8
USP46-208ENST00000512656 ST20-MTHFSA0A0A6YYL1 179 aa10.06□□□□□ -0.8
USP46-208ENST00000512656 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.06□□□□□ -0.8
USP46-208ENST00000512656 COG3Q96JB2 828 aa10.06□□□□□ -0.8
USP46-208ENST00000512656 STK32BQ9NY57 414 aa10.06□□□□□ -0.8
USP46-208ENST00000512656 TRIM26Q12899 539 aaPredicted RBP10.05□□□□□ -0.8
USP46-208ENST00000512656 TXNRD1Q16881 649 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 PTF1AQ7RTS3 328 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 IP6K1Q92551 441 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 TESK2Q96S53 571 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 USP54Q70EL1 1684 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 WNK3Q9BYP7 1800 aa10.05□□□□□ -0.8
USP46-208ENST00000512656 RGPD5Q99666 1765 aa10.04□□□□□ -0.8
USP46-208ENST00000512656 RCCD1A6NED2 376 aa10.04□□□□□ -0.8
USP46-208ENST00000512656 TMF1P82094 1093 aa10.04□□□□□ -0.8
USP46-208ENST00000512656 CDCA8Q53HL2 280 aa10.04□□□□□ -0.8
USP46-208ENST00000512656 SBF2Q86WG5 1849 aa10.04□□□□□ -0.8
USP46-208ENST00000512656 AMPHP49418 695 aa10.03□□□□□ -0.8
USP46-208ENST00000512656 SLC15A2Q16348 729 aa10.02□□□□□ -0.81
USP46-208ENST00000512656 PXYLP1Q8TE99 480 aa10.02□□□□□ -0.81
USP46-208ENST00000512656 LTV1Q96GA3 475 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms