RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 SRP68Q9UHB9 627 aaKnown RBP21.31■■□□□ 1
PDLIM5-212ENST00000509333 CD2APQ9Y5K6 639 aa21.31■■□□□ 1
PDLIM5-212ENST00000509333 COL5A3P25940 1745 aaPredicted RBP21.31■■□□□ 1
PDLIM5-212ENST00000509333 DCAF8L1A6NGE4 600 aa21.3■■□□□ 1
PDLIM5-212ENST00000509333 MMP10P09238 476 aa21.3■■□□□ 1
PDLIM5-212ENST00000509333 EIF5P55010 431 aaKnown RBP21.3■■□□□ 1
PDLIM5-212ENST00000509333 NLGN2Q8NFZ4 835 aa21.3■■□□□ 1
PDLIM5-212ENST00000509333 A1BGP04217 495 aa21.29■■□□□ 1
PDLIM5-212ENST00000509333 SNRPA1P09661 255 aaKnown RBP21.29■■□□□ 1
PDLIM5-212ENST00000509333 PNISRQ8TF01 805 aaKnown RBP21.29■■□□□ 1
PDLIM5-212ENST00000509333 TJP1Q07157 1748 aa21.29■■□□□ 1
PDLIM5-212ENST00000509333 SIPA1L3O60292 1781 aaPredicted RBP21.28■■□□□ 1
PDLIM5-212ENST00000509333 PRAMEF22A3QJZ6 481 aa21.28■■□□□ 1
PDLIM5-212ENST00000509333 FKBP8Q14318 412 aa21.28■■□□□ 1
PDLIM5-212ENST00000509333 NARFQ9UHQ1 456 aa21.28■■□□□ 1
PDLIM5-212ENST00000509333 TM4SF1P30408 202 aa21.27■■□□□ 1
PDLIM5-212ENST00000509333 RRP7AQ9Y3A4 280 aaKnown RBP21.27■■□□□ 1
PDLIM5-212ENST00000509333 USP42Q9H9J4 1324 aaKnown RBP21.27■□□□□ 0.99
PDLIM5-212ENST00000509333 CICQ96RK0 1608 aaPredicted RBP21.26■□□□□ 0.99
PDLIM5-212ENST00000509333 ZPR1O75312 459 aa21.26■□□□□ 0.99
PDLIM5-212ENST00000509333 NEUROD2Q15784 382 aa21.26■□□□□ 0.99
PDLIM5-212ENST00000509333 USPL1Q5W0Q7 1092 aa21.26■□□□□ 0.99
PDLIM5-212ENST00000509333 IL6STP40189 918 aaPredicted RBP21.25■□□□□ 0.99
PDLIM5-212ENST00000509333 EIF4A1P60842 406 aaKnown RBP21.25■□□□□ 0.99
PDLIM5-212ENST00000509333 BCL2L12Q9HB09 334 aa21.25■□□□□ 0.99
PDLIM5-212ENST00000509333 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
PDLIM5-212ENST00000509333 UBR2Q8IWV8 1755 aa21.25■□□□□ 0.99
PDLIM5-212ENST00000509333 A0A087WZG4 1122 aa21.23■□□□□ 0.99
PDLIM5-212ENST00000509333 ANP32CO43423 234 aa21.23■□□□□ 0.99
PDLIM5-212ENST00000509333 GIGYF1O75420 1035 aaPredicted RBP21.23■□□□□ 0.99
PDLIM5-212ENST00000509333 DLG5Q8TDM6 1919 aa21.23■□□□□ 0.99
PDLIM5-212ENST00000509333 LMOD3Q0VAK6 560 aa21.22■□□□□ 0.99
PDLIM5-212ENST00000509333 GPR162Q16538 588 aa21.22■□□□□ 0.99
PDLIM5-212ENST00000509333 BABAM1Q9NWV8 329 aa21.22■□□□□ 0.99
PDLIM5-212ENST00000509333 PARP3Q9Y6F1 533 aa21.22■□□□□ 0.99
PDLIM5-212ENST00000509333 NBPF26B4DH59 902 aa21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 DDR1Q08345 913 aa21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 NBPF10Q6P3W6 841 aaKnown RBP21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 NBPF15Q8N660 670 aa21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 TBC1D2BQ9UPU7 963 aa21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 COL15A1P39059 1388 aa21.21■□□□□ 0.99
PDLIM5-212ENST00000509333 APAF1O14727 1248 aa21.2■□□□□ 0.98
PDLIM5-212ENST00000509333 CHL1O00533 1208 aa21.19■□□□□ 0.98
PDLIM5-212ENST00000509333 PIP4K2AP48426 406 aaPredicted RBP21.19■□□□□ 0.98
PDLIM5-212ENST00000509333 NFIXQ14938 502 aa21.19■□□□□ 0.98
PDLIM5-212ENST00000509333 POLRMTO00411 1230 aaKnown RBP21.18■□□□□ 0.98
PDLIM5-212ENST00000509333 TSPYL4Q9UJ04 414 aa21.18■□□□□ 0.98
PDLIM5-212ENST00000509333 YBX3P16989 372 aaKnown RBP eCLIP21.17■□□□□ 0.981e-7■■□□□ 12.5
PDLIM5-212ENST00000509333 TGFB2P61812 414 aa21.17■□□□□ 0.98
PDLIM5-212ENST00000509333 ZNF330Q9Y3S2 320 aaPredicted RBP21.17■□□□□ 0.98
PDLIM5-212ENST00000509333 CAMTA2O94983 1202 aa21.15■□□□□ 0.98
PDLIM5-212ENST00000509333 NPM2Q86SE8 214 aaKnown RBP21.15■□□□□ 0.98
PDLIM5-212ENST00000509333 PELP1Q8IZL8 1130 aaKnown RBP21.15■□□□□ 0.98
PDLIM5-212ENST00000509333 A0A0G2JLW4 131 aa21.14■□□□□ 0.97
PDLIM5-212ENST00000509333 MRS2Q9HD23 443 aa21.14■□□□□ 0.97
PDLIM5-212ENST00000509333 C4AP0C0L4 1744 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 GRIN3BO60391 1043 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 SERPINB2P05120 415 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 KCNA3P22001 575 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 TBC1D9BQ66K14 1250 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 DZIP3Q86Y13 1208 aaKnown RBP21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 UTRNP46939 3433 aa21.13■□□□□ 0.97
PDLIM5-212ENST00000509333 DPEP1P16444 411 aa21.12■□□□□ 0.97
PDLIM5-212ENST00000509333 YY1P25490 414 aa21.12■□□□□ 0.97
PDLIM5-212ENST00000509333 BICDL1Q6ZP65 573 aa21.12■□□□□ 0.97
PDLIM5-212ENST00000509333 ZNF853P0CG23 659 aa21.11■□□□□ 0.97
PDLIM5-212ENST00000509333 CLEC4GQ6UXB4 293 aa21.11■□□□□ 0.97
PDLIM5-212ENST00000509333 CFAP44Q96MT7 982 aa21.11■□□□□ 0.97
PDLIM5-212ENST00000509333 LAS1LQ9Y4W2 734 aaKnown RBP21.11■□□□□ 0.97
PDLIM5-212ENST00000509333 C10orf71Q711Q0 1435 aa21.09■□□□□ 0.97
PDLIM5-212ENST00000509333 RGL2O15211 777 aa21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 EIF2S2P20042 333 aaKnown RBP21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 PDIA6Q15084 440 aa21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 NGEFQ8N5V2 710 aa21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 SETDB2Q96T68 719 aa21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 WWC3Q9ULE0 1092 aa21.08■□□□□ 0.97
PDLIM5-212ENST00000509333 KDM3BQ7LBC6 1761 aa21.08■□□□□ 0.96
PDLIM5-212ENST00000509333 KRT24Q2M2I5 525 aa21.07■□□□□ 0.96
PDLIM5-212ENST00000509333 GOLGB1Q14789 3259 aaKnown RBP21.07■□□□□ 0.96
PDLIM5-212ENST00000509333 HLFQ16534 295 aa21.06■□□□□ 0.96
PDLIM5-212ENST00000509333 TTLL7Q6ZT98 887 aa21.06■□□□□ 0.96
PDLIM5-212ENST00000509333 LRP10Q7Z4F1 713 aa21.06■□□□□ 0.96
PDLIM5-212ENST00000509333 ERBB4Q15303 1308 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 ERVV-1B6SEH8 477 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 MYL6BP14649 208 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 CHRNA5P30532 468 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 NCBP3Q53F19 620 aaKnown RBP21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 MBIPQ9NS73 344 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 PXDNLA1KZ92 1463 aa21.05■□□□□ 0.96
PDLIM5-212ENST00000509333 SENP3-EIF4A1A0A087X0R7 540 aa21.04■□□□□ 0.96
PDLIM5-212ENST00000509333 CCDC27Q2M243 656 aa21.04■□□□□ 0.96
PDLIM5-212ENST00000509333 IFT57Q9NWB7 429 aa21.04■□□□□ 0.96
PDLIM5-212ENST00000509333 PIM2Q9P1W9 311 aa21.04■□□□□ 0.96
PDLIM5-212ENST00000509333 GNAI1P63096 354 aa21.03■□□□□ 0.96
PDLIM5-212ENST00000509333 CALD1Q05682 793 aaKnown RBP21.03■□□□□ 0.96
PDLIM5-212ENST00000509333 PRR5LQ6MZQ0 368 aa21.03■□□□□ 0.96
PDLIM5-212ENST00000509333 KIF13BQ9NQT8 1826 aa21.03■□□□□ 0.96
PDLIM5-212ENST00000509333 PROSER3Q2NL68 480 aa21.02■□□□□ 0.96
PDLIM5-212ENST00000509333 WWC1Q8IX03 1113 aa21.02■□□□□ 0.96
PDLIM5-212ENST00000509333 CCDC24Q8N4L8 307 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms