RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 ZNF827Q17R98 1081 aa16.68■□□□□ 0.26
TCOF1-210ENST00000506767 KRT24Q2M2I5 525 aa16.68■□□□□ 0.26
TCOF1-210ENST00000506767 CDCA7LQ96GN5 454 aa16.68■□□□□ 0.26
TCOF1-210ENST00000506767 MYH16Q9H6N6 1097 aa16.68■□□□□ 0.26
TCOF1-210ENST00000506767 HOXB7P09629 217 aa16.67■□□□□ 0.26
TCOF1-210ENST00000506767 SLC15A2Q16348 729 aa16.67■□□□□ 0.26
TCOF1-210ENST00000506767 NBPF14Q5TI25 921 aa16.67■□□□□ 0.26
TCOF1-210ENST00000506767 INTS5Q6P9B9 1019 aaKnown RBP16.67■□□□□ 0.26
TCOF1-210ENST00000506767 STARD3NLO95772 234 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 CRKLP46109 303 aaKnown RBP16.66■□□□□ 0.26
TCOF1-210ENST00000506767 QSER1Q2KHR3 1735 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 UBR3Q6ZT12 1888 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 C8orf58Q8NAV2 365 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 STK32BQ9NY57 414 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 TUBGCP6Q96RT7 1819 aa16.66■□□□□ 0.26
TCOF1-210ENST00000506767 DUSP27Q5VZP5 1158 aa16.65■□□□□ 0.26
TCOF1-210ENST00000506767 CCDC87Q9NVE4 849 aa16.65■□□□□ 0.26
TCOF1-210ENST00000506767 SOS1Q07889 1333 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-210ENST00000506767 TSPYL6Q8N831 410 aa16.64■□□□□ 0.25
TCOF1-210ENST00000506767 RPS6KA4O75676 772 aa16.63■□□□□ 0.25
TCOF1-210ENST00000506767 A1BGP04217 495 aa16.63■□□□□ 0.25
TCOF1-210ENST00000506767 EXOSC9Q06265 439 aaKnown RBP16.63■□□□□ 0.25
TCOF1-210ENST00000506767 AMIGO3Q86WK7 504 aa16.63■□□□□ 0.25
TCOF1-210ENST00000506767 AK7Q96M32 723 aa16.63■□□□□ 0.25
TCOF1-210ENST00000506767 ZBTB1Q9Y2K1 713 aa16.63■□□□□ 0.25
TCOF1-210ENST00000506767 ELL2O00472 640 aaPredicted RBP16.62■□□□□ 0.25
TCOF1-210ENST00000506767 TFCP2L1Q9NZI6 479 aa16.62■□□□□ 0.25
TCOF1-210ENST00000506767 NBPF26B4DH59 902 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 GNPATO15228 680 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 VAMP4O75379 141 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 SSFA2P28290 1259 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 TWISTNBQ3B726 338 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-210ENST00000506767 NBPF10Q6P3W6 841 aaKnown RBP16.61■□□□□ 0.25
TCOF1-210ENST00000506767 NBPF15Q8N660 670 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 RTCBQ9Y3I0 505 aaKnown RBP16.61■□□□□ 0.25
TCOF1-210ENST00000506767 ERBB4Q15303 1308 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 PNPLA7Q6ZV29 1317 aa16.61■□□□□ 0.25
TCOF1-210ENST00000506767 EIF2S2P20042 333 aaKnown RBP16.6■□□□□ 0.25
TCOF1-210ENST00000506767 IL6STP40189 918 aaPredicted RBP16.6■□□□□ 0.25
TCOF1-210ENST00000506767 EIF5P55010 431 aaKnown RBP16.6■□□□□ 0.25
TCOF1-210ENST00000506767 PDIA6Q15084 440 aa16.6■□□□□ 0.25
TCOF1-210ENST00000506767 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.59■□□□□ 0.25
TCOF1-210ENST00000506767 ADRA2BP18089 450 aa16.59■□□□□ 0.25
TCOF1-210ENST00000506767 CANXP27824 592 aaKnown RBP16.59■□□□□ 0.25
TCOF1-210ENST00000506767 HDGFL1Q5TGJ6 251 aa16.59■□□□□ 0.25
TCOF1-210ENST00000506767 SMIM5Q71RC9 77 aa16.59■□□□□ 0.25
TCOF1-210ENST00000506767 FLAD1Q8NFF5 587 aa16.59■□□□□ 0.25
TCOF1-210ENST00000506767 CASZ1Q86V15 1759 aa16.59■□□□□ 0.25
TCOF1-210ENST00000506767 PIP4K2AP48426 406 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-210ENST00000506767 TRAPPC3LQ5T215 181 aa16.58■□□□□ 0.24
TCOF1-210ENST00000506767 LRP10Q7Z4F1 713 aa16.58■□□□□ 0.24
TCOF1-210ENST00000506767 COL23A1Q86Y22 540 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-210ENST00000506767 CHMP4AQ9BY43 222 aa16.58■□□□□ 0.24
TCOF1-210ENST00000506767 C4AP0C0L4 1744 aa16.57■□□□□ 0.24
TCOF1-210ENST00000506767 COL15A1P39059 1388 aa16.57■□□□□ 0.24
TCOF1-210ENST00000506767 NECTIN2Q92692 538 aa16.57■□□□□ 0.24
TCOF1-210ENST00000506767 ARHGEF1Q92888 912 aaKnown RBP16.57■□□□□ 0.24
TCOF1-210ENST00000506767 DDX21Q9NR30 783 aaKnown RBP eCLIP16.57■□□□□ 0.24
TCOF1-210ENST00000506767 PHF14O94880 888 aa16.56■□□□□ 0.24
TCOF1-210ENST00000506767 PROSER3Q2NL68 480 aa16.56■□□□□ 0.24
TCOF1-210ENST00000506767 CCDC30Q5VVM6 783 aa16.56■□□□□ 0.24
TCOF1-210ENST00000506767 PDGFDQ9GZP0 370 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-210ENST00000506767 CHPF2Q9P2E5 772 aa16.56■□□□□ 0.24
TCOF1-210ENST00000506767 DBF4Q9UBU7 674 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-210ENST00000506767 CT47B1P0C2W7 299 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-210ENST00000506767 YTHDC1Q96MU7 727 aaKnown RBP16.55■□□□□ 0.24
TCOF1-210ENST00000506767 A0A087WZG4 1122 aa16.54■□□□□ 0.24
TCOF1-210ENST00000506767 ANXA1P04083 346 aa16.54■□□□□ 0.24
TCOF1-210ENST00000506767 MYL6BP14649 208 aa16.54■□□□□ 0.24
TCOF1-210ENST00000506767 USP42Q9H9J4 1324 aaKnown RBP16.53■□□□□ 0.24
TCOF1-210ENST00000506767 RFC4P35249 363 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 SLC16A10Q8TF71 515 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 ZNF428Q96B54 188 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 HYPKQ9NX55 129 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 NARFQ9UHQ1 456 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 CACNA1FO60840 1977 aa16.53■□□□□ 0.24
TCOF1-210ENST00000506767 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
TCOF1-210ENST00000506767 COL24A1Q17RW2 1714 aa16.52■□□□□ 0.24
TCOF1-210ENST00000506767 BCORQ6W2J9 1755 aa16.51■□□□□ 0.23
TCOF1-210ENST00000506767 DZIP3Q86Y13 1208 aaKnown RBP16.51■□□□□ 0.23
TCOF1-210ENST00000506767 STK31Q9BXU1 1019 aa16.51■□□□□ 0.23
TCOF1-210ENST00000506767 TBC1D2BQ9UPU7 963 aa16.51■□□□□ 0.23
TCOF1-210ENST00000506767 SCN7AQ01118 1682 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 LRP5O75197 1615 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 TCERG1O14776 1098 aaKnown RBP16.5■□□□□ 0.23
TCOF1-210ENST00000506767 RGL2O15211 777 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 MSH5O43196 834 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 CAMTA2O94983 1202 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 SLC4A2P04920 1241 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 GYS1P13807 737 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 TTLL7Q6ZT98 887 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 COPS6Q7L5N1 327 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 NPM2Q86SE8 214 aaKnown RBP16.5■□□□□ 0.23
TCOF1-210ENST00000506767 XAGE3Q8WTP9 111 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 PHAXQ9H814 394 aaKnown RBP16.5■□□□□ 0.23
TCOF1-210ENST00000506767 BCL2L12Q9HB09 334 aa16.5■□□□□ 0.23
TCOF1-210ENST00000506767 SRP68Q9UHB9 627 aaKnown RBP16.5■□□□□ 0.23
TCOF1-210ENST00000506767 ZPR1O75312 459 aa16.49■□□□□ 0.23
TCOF1-210ENST00000506767 ALDH1L2Q3SY69 923 aa16.49■□□□□ 0.23
TCOF1-210ENST00000506767 USPL1Q5W0Q7 1092 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms