RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 KCNQ3O43525 872 aa15.56■□□□□ 0.08
PDLIM5-208ENST00000504489 ATP6V1AP38606 617 aa15.56■□□□□ 0.08
PDLIM5-208ENST00000504489 KCNQ4P56696 695 aa15.56■□□□□ 0.08
PDLIM5-208ENST00000504489 VSIG10Q8N0Z9 540 aa15.56■□□□□ 0.08
PDLIM5-208ENST00000504489 MIS18AQ9NYP9 233 aa15.56■□□□□ 0.08
PDLIM5-208ENST00000504489 HEG1Q9ULI3 1381 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 SENP3-EIF4A1A0A087X0R7 540 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 CHL1O00533 1208 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 ITPK1Q13572 414 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 NBPF14Q5TI25 921 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 ZNF496Q96IT1 587 aaPredicted RBP15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 FMNL2Q96PY5 1086 aa15.55■□□□□ 0.08
PDLIM5-208ENST00000504489 IL16Q14005 1332 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 ZNF853P0CG23 659 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 WDR63Q8IWG1 891 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 CFAP44Q96MT7 982 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 IFT57Q9NWB7 429 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 TSPYL4Q9UJ04 414 aa15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 SALL2Q9Y467 1007 aaPredicted RBP15.54■□□□□ 0.08
PDLIM5-208ENST00000504489 GNAI1P63096 354 aa15.53■□□□□ 0.08
PDLIM5-208ENST00000504489 CASZ1Q86V15 1759 aa15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 FXR2P51116 673 aaKnown RBP eCLIP15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 EIF4A1P60842 406 aaKnown RBP15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 LINC00116Q8NCU8 138 aa15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 TEX13AQ9BXU3 409 aaPredicted RBP15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 ANO8Q9HCE9 1232 aaPredicted RBP15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 LAS1LQ9Y4W2 734 aaKnown RBP15.52■□□□□ 0.08
PDLIM5-208ENST00000504489 ZNF521Q96K83 1311 aa15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 SLC15A2Q16348 729 aa15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 RC3H1Q5TC82 1133 aaKnown RBP15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 DNAJC10Q8IXB1 793 aa15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 STK32BQ9NY57 414 aa15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 C4AP0C0L4 1744 aa15.51■□□□□ 0.07
PDLIM5-208ENST00000504489 CNTNAP4Q9C0A0 1308 aa15.5■□□□□ 0.07
PDLIM5-208ENST00000504489 SNRPA1P09661 255 aaKnown RBP15.5■□□□□ 0.07
PDLIM5-208ENST00000504489 ZNF827Q17R98 1081 aa15.5■□□□□ 0.07
PDLIM5-208ENST00000504489 GIGYF1O75420 1035 aaPredicted RBP15.49■□□□□ 0.07
PDLIM5-208ENST00000504489 STARD3NLO95772 234 aa15.49■□□□□ 0.07
PDLIM5-208ENST00000504489 CYP19A1P11511 503 aaPredicted RBP15.49■□□□□ 0.07
PDLIM5-208ENST00000504489 MBIPQ9NS73 344 aa15.49■□□□□ 0.07
PDLIM5-208ENST00000504489 CRKLP46109 303 aaKnown RBP15.48■□□□□ 0.07
PDLIM5-208ENST00000504489 AK7Q96M32 723 aa15.48■□□□□ 0.07
PDLIM5-208ENST00000504489 COL24A1Q17RW2 1714 aa15.48■□□□□ 0.07
PDLIM5-208ENST00000504489 R3HDM1Q15032 1099 aaKnown RBP15.47■□□□□ 0.07
PDLIM5-208ENST00000504489 TFCP2L1Q9NZI6 479 aa15.47■□□□□ 0.07
PDLIM5-208ENST00000504489 USP16Q9Y5T5 823 aa15.47■□□□□ 0.07
PDLIM5-208ENST00000504489 RPS6KA4O75676 772 aa15.46■□□□□ 0.07
PDLIM5-208ENST00000504489 INTS5Q6P9B9 1019 aaKnown RBP15.46■□□□□ 0.07
PDLIM5-208ENST00000504489 CCDC87Q9NVE4 849 aa15.46■□□□□ 0.07
PDLIM5-208ENST00000504489 PRAMEF22A3QJZ6 481 aa15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 SPDYE4A6NLX3 237 aa15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 GNPATO15228 680 aa15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 HNRNPUQ00839 825 aaKnown RBP eCLIP15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 GOLGA2Q08379 1002 aa15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 FLAD1Q8NFF5 587 aa15.45■□□□□ 0.06
PDLIM5-208ENST00000504489 PSDA5PKW4 1024 aaPredicted RBP15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 HOXB7P09629 217 aa15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 SSFA2P28290 1259 aa15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 TSR2Q969E8 191 aaKnown RBP15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 MYH16Q9H6N6 1097 aa15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 RTCBQ9Y3I0 505 aaKnown RBP15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 NUP98P52948 1817 aa15.44■□□□□ 0.06
PDLIM5-208ENST00000504489 PNPLA7Q6ZV29 1317 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 FANCIQ9NVI1 1328 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 KRT24Q2M2I5 525 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 AMIGO3Q86WK7 504 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 ZBTB1Q9Y2K1 713 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 BCORQ6W2J9 1755 aa15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 SOS1Q07889 1333 aaPredicted RBP15.43■□□□□ 0.06
PDLIM5-208ENST00000504489 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 E9PSI1 815 aa15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 A1BGP04217 495 aa15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 SLFN5Q08AF3 891 aa15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 DUSP27Q5VZP5 1158 aa15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 COL23A1Q86Y22 540 aaPredicted RBP15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 C8orf58Q8NAV2 365 aa15.42■□□□□ 0.06
PDLIM5-208ENST00000504489 IL6STP40189 918 aaPredicted RBP15.41■□□□□ 0.06
PDLIM5-208ENST00000504489 TRAPPC3LQ5T215 181 aa15.41■□□□□ 0.06
PDLIM5-208ENST00000504489 ERBB4Q15303 1308 aa15.41■□□□□ 0.06
PDLIM5-208ENST00000504489 CANXP27824 592 aaKnown RBP15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 EIF5P55010 431 aaKnown RBP15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 TRMT2AQ8IZ69 625 aaKnown RBP15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 SLC16A10Q8TF71 515 aa15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 CHMP4AQ9BY43 222 aa15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 PDGFDQ9GZP0 370 aaPredicted RBP15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 SCN7AQ01118 1682 aa15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 ZBED9Q6R2W3 1325 aa15.4■□□□□ 0.06
PDLIM5-208ENST00000504489 NBPF26B4DH59 902 aa15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 PHF14O94880 888 aa15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 EIF2S2P20042 333 aaKnown RBP15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 NBPF10Q6P3W6 841 aaKnown RBP15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 SMIM5Q71RC9 77 aa15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 NBPF15Q8N660 670 aa15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 ARHGEF1Q92888 912 aaKnown RBP15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 CDCA7LQ96GN5 454 aa15.39■□□□□ 0.05
PDLIM5-208ENST00000504489 COL15A1P39059 1388 aa15.38■□□□□ 0.05
PDLIM5-208ENST00000504489 ELL2O00472 640 aaPredicted RBP15.38■□□□□ 0.05
PDLIM5-208ENST00000504489 EXOSC9Q06265 439 aaKnown RBP15.38■□□□□ 0.05
PDLIM5-208ENST00000504489 HDGFL1Q5TGJ6 251 aa15.38■□□□□ 0.05
PDLIM5-208ENST00000504489 TSPYL6Q8N831 410 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms