RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 RTF1Q92541 710 aaKnown RBP14.48□□□□□ -0.09
SHROOM3-210ENST00000497440 BCL2L12Q9HB09 334 aa14.48□□□□□ -0.09
SHROOM3-210ENST00000497440 NARFQ9UHQ1 456 aa14.48□□□□□ -0.09
SHROOM3-210ENST00000497440 MMP10P09238 476 aa14.47□□□□□ -0.09
SHROOM3-210ENST00000497440 IL6STP40189 918 aaPredicted RBP14.46□□□□□ -0.09
SHROOM3-210ENST00000497440 FKBP8Q14318 412 aa14.46□□□□□ -0.09
SHROOM3-210ENST00000497440 SRP68Q9UHB9 627 aaKnown RBP14.46□□□□□ -0.09
SHROOM3-210ENST00000497440 TMPOP42166 694 aaKnown RBP14.45□□□□□ -0.1
SHROOM3-210ENST00000497440 KIAA1551Q9HCM1 1747 aa14.45□□□□□ -0.1
SHROOM3-210ENST00000497440 BABAM1Q9NWV8 329 aa14.45□□□□□ -0.1
SHROOM3-210ENST00000497440 ADAMTS8Q9UP79 889 aa14.45□□□□□ -0.1
SHROOM3-210ENST00000497440 USP16Q9Y5T5 823 aa14.45□□□□□ -0.1
SHROOM3-210ENST00000497440 C10orf71Q711Q0 1435 aa14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 ZNF316A6NFI3 1004 aaPredicted RBP14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 SNRPA1P09661 255 aaKnown RBP14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 TGFB2P61812 414 aa14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 DDR1Q08345 913 aa14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 PNISRQ8TF01 805 aaKnown RBP14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 COL15A1P39059 1388 aa14.44□□□□□ -0.1
SHROOM3-210ENST00000497440 KDM3BQ7LBC6 1761 aa14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 POLRMTO00411 1230 aaKnown RBP14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 RGL2O15211 777 aa14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 A1BGP04217 495 aa14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 YBX3P16989 372 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHROOM3-210ENST00000497440 NRXN2Q9P2S2 1712 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 PRAMEF22A3QJZ6 481 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 GIGYF1O75420 1035 aaPredicted RBP14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 NEFMP07197 916 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 KCNA3P22001 575 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 EIF4A1P60842 406 aaKnown RBP14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 USPL1Q5W0Q7 1092 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 TRIM35Q9UPQ4 493 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 CHD4Q14839 1912 aa14.42□□□□□ -0.1
SHROOM3-210ENST00000497440 A0A087WZG4 1122 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 NBPF26B4DH59 902 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 RIPK4P57078 832 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 NBPF10Q6P3W6 841 aaKnown RBP14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 NBPF15Q8N660 670 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 RUNDC1Q96C34 613 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 MIS18AQ9NYP9 233 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 PXDNLA1KZ92 1463 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 MAPK8IP3Q9UPT6 1336 aa14.41□□□□□ -0.1
SHROOM3-210ENST00000497440 GRIN3BO60391 1043 aa14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 ZPR1O75312 459 aa14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 CANXP27824 592 aaKnown RBP14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 NFIXQ14938 502 aa14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 THUMPD2Q9BTF0 503 aaKnown RBP14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 PARP3Q9Y6F1 533 aa14.4□□□□□ -0.1
SHROOM3-210ENST00000497440 CHL1O00533 1208 aa14.39□□□□□ -0.11
SHROOM3-210ENST00000497440 CAMTA2O94983 1202 aa14.39□□□□□ -0.11
SHROOM3-210ENST00000497440 YY1P25490 414 aa14.38□□□□□ -0.11
SHROOM3-210ENST00000497440 GPR162Q16538 588 aa14.38□□□□□ -0.11
SHROOM3-210ENST00000497440 CCDC184Q52MB2 194 aa14.38□□□□□ -0.11
SHROOM3-210ENST00000497440 LRP10Q7Z4F1 713 aa14.38□□□□□ -0.11
SHROOM3-210ENST00000497440 BRCA1P38398 1863 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-210ENST00000497440 LMOD3Q0VAK6 560 aa14.37□□□□□ -0.11
SHROOM3-210ENST00000497440 NCBP3Q53F19 620 aaKnown RBP14.37□□□□□ -0.11
SHROOM3-210ENST00000497440 CLEC4GQ6UXB4 293 aa14.37□□□□□ -0.11
SHROOM3-210ENST00000497440 KLHL34Q8N239 644 aa14.37□□□□□ -0.11
SHROOM3-210ENST00000497440 AFDNP55196 1824 aaKnown RBP14.36□□□□□ -0.11
SHROOM3-210ENST00000497440 TBC1D2BQ9UPU7 963 aa14.36□□□□□ -0.11
SHROOM3-210ENST00000497440 SCN7AQ01118 1682 aa14.36□□□□□ -0.11
SHROOM3-210ENST00000497440 SERPINB2P05120 415 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 ZNF853P0CG23 659 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 DPEP1P16444 411 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 WDR43Q15061 677 aaKnown RBP eCLIP14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 TBC1D9BQ66K14 1250 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 CCDC146Q8IYE0 955 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 ERBB4Q15303 1308 aa14.35□□□□□ -0.11
SHROOM3-210ENST00000497440 A0A0G2JLW4 131 aa14.34□□□□□ -0.11
SHROOM3-210ENST00000497440 PDIA6Q15084 440 aa14.34□□□□□ -0.11
SHROOM3-210ENST00000497440 LAMB4A4D0S4 1761 aa14.34□□□□□ -0.11
SHROOM3-210ENST00000497440 BCORQ6W2J9 1755 aa14.33□□□□□ -0.12
SHROOM3-210ENST00000497440 N4BP2Q86UW6 1770 aaPredicted RBP14.33□□□□□ -0.12
SHROOM3-210ENST00000497440 DZIP3Q86Y13 1208 aaKnown RBP14.33□□□□□ -0.12
SHROOM3-210ENST00000497440 RRP7AQ9Y3A4 280 aaKnown RBP14.33□□□□□ -0.12
SHROOM3-210ENST00000497440 KLRG2A4D1S0 409 aaPredicted RBP14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 ERVV-1B6SEH8 477 aa14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 PIP4K2AP48426 406 aaPredicted RBP14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 ZNF784Q8NCA9 323 aaPredicted RBP14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 CFAP44Q96MT7 982 aa14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 TSPYL4Q9UJ04 414 aa14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 ADCY9O60503 1353 aa14.32□□□□□ -0.12
SHROOM3-210ENST00000497440 APAF1O14727 1248 aa14.31□□□□□ -0.12
SHROOM3-210ENST00000497440 CCDC27Q2M243 656 aa14.31□□□□□ -0.12
SHROOM3-210ENST00000497440 PIM2Q9P1W9 311 aa14.31□□□□□ -0.12
SHROOM3-210ENST00000497440 ARFGEF1Q9Y6D6 1849 aa14.3□□□□□ -0.12
SHROOM3-210ENST00000497440 PRR5LQ6MZQ0 368 aa14.3□□□□□ -0.12
SHROOM3-210ENST00000497440 BRIP1Q9BX63 1249 aa14.3□□□□□ -0.12
SHROOM3-210ENST00000497440 PDZRN3Q9UPQ7 1066 aa14.3□□□□□ -0.12
SHROOM3-210ENST00000497440 CARMIL3Q8ND23 1372 aa14.3□□□□□ -0.12
SHROOM3-210ENST00000497440 HOXB7P09629 217 aa14.29□□□□□ -0.12
SHROOM3-210ENST00000497440 NEUROD2Q15784 382 aa14.29□□□□□ -0.12
SHROOM3-210ENST00000497440 HLFQ16534 295 aa14.29□□□□□ -0.12
SHROOM3-210ENST00000497440 SETDB2Q96T68 719 aa14.29□□□□□ -0.12
SHROOM3-210ENST00000497440 ANKRD31Q8N7Z5 1873 aa14.29□□□□□ -0.12
SHROOM3-210ENST00000497440 CHRNA5P30532 468 aa14.28□□□□□ -0.12
SHROOM3-210ENST00000497440 TTLL7Q6ZT98 887 aa14.28□□□□□ -0.12
SHROOM3-210ENST00000497440 DLEC1Q9Y238 1755 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms