RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 USP16Q9Y5T5 823 aa22.16■■□□□ 1.14
HDAC6-235ENST00000495515 C4BP0C0L5 1744 aa22.16■■□□□ 1.14
HDAC6-235ENST00000495515 SRCAPQ6ZRS2 3230 aa22.15■■□□□ 1.14
HDAC6-235ENST00000495515 E9PSI1 815 aa22.15■■□□□ 1.14
HDAC6-235ENST00000495515 RPS6KA4O75676 772 aa22.15■■□□□ 1.14
HDAC6-235ENST00000495515 SSFA2P28290 1259 aa22.15■■□□□ 1.14
HDAC6-235ENST00000495515 NPM2Q86SE8 214 aaKnown RBP22.15■■□□□ 1.14
HDAC6-235ENST00000495515 TSR2Q969E8 191 aaKnown RBP22.15■■□□□ 1.14
HDAC6-235ENST00000495515 TJP1Q07157 1748 aa22.14■■□□□ 1.14
HDAC6-235ENST00000495515 PRAMEF22A3QJZ6 481 aa22.14■■□□□ 1.13
HDAC6-235ENST00000495515 ADRA2BP18089 450 aa22.14■■□□□ 1.13
HDAC6-235ENST00000495515 INTS5Q6P9B9 1019 aaKnown RBP22.14■■□□□ 1.13
HDAC6-235ENST00000495515 TAF1LQ8IZX4 1826 aa22.13■■□□□ 1.13
HDAC6-235ENST00000495515 SOS1Q07889 1333 aaPredicted RBP22.13■■□□□ 1.13
HDAC6-235ENST00000495515 FANCIQ9NVI1 1328 aa22.13■■□□□ 1.13
HDAC6-235ENST00000495515 TRAPPC3LQ5T215 181 aa22.12■■□□□ 1.13
HDAC6-235ENST00000495515 DUSP27Q5VZP5 1158 aa22.12■■□□□ 1.13
HDAC6-235ENST00000495515 ZBTB1Q9Y2K1 713 aa22.12■■□□□ 1.13
HDAC6-235ENST00000495515 ERBB4Q15303 1308 aa22.11■■□□□ 1.13
HDAC6-235ENST00000495515 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.11■■□□□ 1.13
HDAC6-235ENST00000495515 MSH5O43196 834 aa22.11■■□□□ 1.13
HDAC6-235ENST00000495515 PHF14O94880 888 aa22.11■■□□□ 1.13
HDAC6-235ENST00000495515 CANXP27824 592 aaKnown RBP22.11■■□□□ 1.13
HDAC6-235ENST00000495515 COL5A3P25940 1745 aaPredicted RBP22.11■■□□□ 1.13
HDAC6-235ENST00000495515 PNPLA7Q6ZV29 1317 aa22.1■■□□□ 1.13
HDAC6-235ENST00000495515 A1BGP04217 495 aa22.1■■□□□ 1.13
HDAC6-235ENST00000495515 EIF2S2P20042 333 aaKnown RBP22.1■■□□□ 1.13
HDAC6-235ENST00000495515 IL6STP40189 918 aaPredicted RBP22.1■■□□□ 1.13
HDAC6-235ENST00000495515 KRT24Q2M2I5 525 aa22.1■■□□□ 1.13
HDAC6-235ENST00000495515 SPINK5Q9NQ38 1064 aaPredicted RBP22.1■■□□□ 1.13
HDAC6-235ENST00000495515 ZBED9Q6R2W3 1325 aa22.09■■□□□ 1.13
HDAC6-235ENST00000495515 A0A087WZG4 1122 aa22.09■■□□□ 1.13
HDAC6-235ENST00000495515 SLFN5Q08AF3 891 aa22.09■■□□□ 1.13
HDAC6-235ENST00000495515 HDGFL1Q5TGJ6 251 aa22.09■■□□□ 1.13
HDAC6-235ENST00000495515 ELL2O00472 640 aaPredicted RBP22.08■■□□□ 1.13
HDAC6-235ENST00000495515 RFC4P35249 363 aa22.08■■□□□ 1.13
HDAC6-235ENST00000495515 COL23A1Q86Y22 540 aaPredicted RBP22.08■■□□□ 1.13
HDAC6-235ENST00000495515 C8orf58Q8NAV2 365 aa22.08■■□□□ 1.13
HDAC6-235ENST00000495515 SLC16A10Q8TF71 515 aa22.08■■□□□ 1.13
HDAC6-235ENST00000495515 TWISTNBQ3B726 338 aaPredicted RBP22.07■■□□□ 1.12
HDAC6-235ENST00000495515 ZNF330Q9Y3S2 320 aaPredicted RBP22.07■■□□□ 1.12
HDAC6-235ENST00000495515 EIF5P55010 431 aaKnown RBP22.06■■□□□ 1.12
HDAC6-235ENST00000495515 EXOSC9Q06265 439 aaKnown RBP22.06■■□□□ 1.12
HDAC6-235ENST00000495515 ARHGEF1Q92888 912 aaKnown RBP22.06■■□□□ 1.12
HDAC6-235ENST00000495515 COL15A1P39059 1388 aa22.05■■□□□ 1.12
HDAC6-235ENST00000495515 CCDC30Q5VVM6 783 aa22.05■■□□□ 1.12
HDAC6-235ENST00000495515 CDCA7LQ96GN5 454 aa22.05■■□□□ 1.12
HDAC6-235ENST00000495515 NBPF26B4DH59 902 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 NBPF10Q6P3W6 841 aaKnown RBP22.04■■□□□ 1.12
HDAC6-235ENST00000495515 AMIGO3Q86WK7 504 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 NBPF15Q8N660 670 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 TSPYL6Q8N831 410 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 NECTIN2Q92692 538 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 DBF4Q9UBU7 674 aaPredicted RBP22.04■■□□□ 1.12
HDAC6-235ENST00000495515 LAMB4A4D0S4 1761 aa22.04■■□□□ 1.12
HDAC6-235ENST00000495515 QSER1Q2KHR3 1735 aa22.03■■□□□ 1.12
HDAC6-235ENST00000495515 ZPR1O75312 459 aa22.03■■□□□ 1.12
HDAC6-235ENST00000495515 SMIM5Q71RC9 77 aa22.03■■□□□ 1.12
HDAC6-235ENST00000495515 DDX21Q9NR30 783 aaKnown RBP eCLIP22.03■■□□□ 1.12
HDAC6-235ENST00000495515 MYH14Q7Z406 1995 aaKnown RBP22.02■■□□□ 1.12
HDAC6-235ENST00000495515 MYL6BP14649 208 aa22.02■■□□□ 1.12
HDAC6-235ENST00000495515 PIP4K2AP48426 406 aaPredicted RBP22.02■■□□□ 1.12
HDAC6-235ENST00000495515 TRMT2AQ8IZ69 625 aaKnown RBP22.02■■□□□ 1.12
HDAC6-235ENST00000495515 ARXQ96QS3 562 aa22.02■■□□□ 1.12
HDAC6-235ENST00000495515 STK31Q9BXU1 1019 aa22.02■■□□□ 1.12
HDAC6-235ENST00000495515 PDGFDQ9GZP0 370 aaPredicted RBP22.02■■□□□ 1.12
HDAC6-235ENST00000495515 MTFR1LQ9H019 292 aa22.02■■□□□ 1.12
HDAC6-235ENST00000495515 UBR3Q6ZT12 1888 aa22.02■■□□□ 1.12
HDAC6-235ENST00000495515 CHPF2Q9P2E5 772 aa22.01■■□□□ 1.11
HDAC6-235ENST00000495515 NARFQ9UHQ1 456 aa22.01■■□□□ 1.11
HDAC6-235ENST00000495515 CASZ1Q86V15 1759 aa22.01■■□□□ 1.11
HDAC6-235ENST00000495515 VAMP4O75379 141 aa22■■□□□ 1.11
HDAC6-235ENST00000495515 DZIP3Q86Y13 1208 aaKnown RBP22■■□□□ 1.11
HDAC6-235ENST00000495515 HYPKQ9NX55 129 aa22■■□□□ 1.11
HDAC6-235ENST00000495515 USP42Q9H9J4 1324 aaKnown RBP22■■□□□ 1.11
HDAC6-235ENST00000495515 ZBTB7AO95365 584 aa21.99■■□□□ 1.11
HDAC6-235ENST00000495515 PDIA6Q15084 440 aa21.99■■□□□ 1.11
HDAC6-235ENST00000495515 NLGN1Q8N2Q7 840 aa21.99■■□□□ 1.11
HDAC6-235ENST00000495515 CT47B1P0C2W7 299 aaPredicted RBP21.98■■□□□ 1.11
HDAC6-235ENST00000495515 KIF6Q6ZMV9 814 aa21.98■■□□□ 1.11
HDAC6-235ENST00000495515 SPON1Q9HCB6 807 aa21.98■■□□□ 1.11
HDAC6-235ENST00000495515 TBC1D2BQ9UPU7 963 aa21.98■■□□□ 1.11
HDAC6-235ENST00000495515 TUBGCP6Q96RT7 1819 aa21.98■■□□□ 1.11
HDAC6-235ENST00000495515 USPL1Q5W0Q7 1092 aa21.97■■□□□ 1.11
HDAC6-235ENST00000495515 ZNF428Q96B54 188 aa21.97■■□□□ 1.11
HDAC6-235ENST00000495515 RGL2O15211 777 aa21.96■■□□□ 1.11
HDAC6-235ENST00000495515 POLD1P28340 1107 aa21.96■■□□□ 1.11
HDAC6-235ENST00000495515 PROSER3Q2NL68 480 aa21.96■■□□□ 1.11
HDAC6-235ENST00000495515 SRP68Q9UHB9 627 aaKnown RBP21.96■■□□□ 1.11
HDAC6-235ENST00000495515 ZNF652Q9Y2D9 606 aa21.96■■□□□ 1.11
HDAC6-235ENST00000495515 ANXA1P04083 346 aa21.95■■□□□ 1.1
HDAC6-235ENST00000495515 GYS1P13807 737 aa21.95■■□□□ 1.1
HDAC6-235ENST00000495515 ATF5Q9Y2D1 282 aaPredicted RBP21.95■■□□□ 1.1
HDAC6-235ENST00000495515 CAMTA2O94983 1202 aa21.94■■□□□ 1.1
HDAC6-235ENST00000495515 MSL1Q68DK7 614 aa21.94■■□□□ 1.1
HDAC6-235ENST00000495515 COPS6Q7L5N1 327 aa21.94■■□□□ 1.1
HDAC6-235ENST00000495515 LRP10Q7Z4F1 713 aa21.94■■□□□ 1.1
HDAC6-235ENST00000495515 XAGE3Q8WTP9 111 aa21.94■■□□□ 1.1
HDAC6-235ENST00000495515 YTHDC1Q96MU7 727 aaKnown RBP21.94■■□□□ 1.1
HDAC6-235ENST00000495515 ERVV-1B6SEH8 477 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms