RNA–Protein interactions for RNA: ENST00000494945.1

PKP4-215, Transcript of plakophilin 4, human

TSL 5

Gene PKP4, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKP4-215	ENST00000494945	RGS12	O14924	1447 aa		14.05	□□□□□ -0.16
PKP4-215	ENST00000494945	PXDNL	A1KZ92	1463 aa		14.05	□□□□□ -0.16
PKP4-215	ENST00000494945	RLBP1	P12271	317 aa		14.04	□□□□□ -0.16
PKP4-215	ENST00000494945	EIF2S2	P20042	333 aa	Known RBP	14.04	□□□□□ -0.16
PKP4-215	ENST00000494945	DBF4	Q9UBU7	674 aa	Predicted RBP	14.04	□□□□□ -0.16
PKP4-215	ENST00000494945	ABCC4	O15439	1325 aa		14.04	□□□□□ -0.16
PKP4-215	ENST00000494945	ANKRD36C	Q5JPF3	1778 aa		14.04	□□□□□ -0.16
PKP4-215	ENST00000494945	PRIM1	P49642	420 aa	Known RBP	14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	MVP	Q14764	893 aa	Known RBP	14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	VSIG10	Q8N0Z9	540 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	NECTIN2	Q92692	538 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	CLUAP1	Q96AJ1	413 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	ATG3	Q9NT62	314 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	TNN	Q9UQP3	1299 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	COG6	Q9Y2V7	657 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	ERBB4	Q15303	1308 aa		14.03	□□□□□ -0.16
PKP4-215	ENST00000494945	MYH14	Q7Z406	1995 aa	Known RBP	14.02	□□□□□ -0.16
PKP4-215	ENST00000494945	NUP98	P52948	1817 aa		14.02	□□□□□ -0.16
PKP4-215	ENST00000494945	FLII	Q13045	1269 aa		14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	G2E3	Q7L622	706 aa		14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	SEPT12	Q8IYM1	358 aa		14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	SYTL4	Q96C24	671 aa	Predicted RBP	14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	DDX21	Q9NR30	783 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	CHPF2	Q9P2E5	772 aa		14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	ASAP1	Q9ULH1	1129 aa		14.02	□□□□□ -0.17
PKP4-215	ENST00000494945	PRAMEF22	A3QJZ6	481 aa		14.01	□□□□□ -0.17
PKP4-215	ENST00000494945	RBM6	P78332	1123 aa	Known RBP	14.01	□□□□□ -0.17
PKP4-215	ENST00000494945	TEX13A	Q9BXU3	409 aa	Predicted RBP	14.01	□□□□□ -0.17
PKP4-215	ENST00000494945	HYPK	Q9NX55	129 aa		14.01	□□□□□ -0.17
PKP4-215	ENST00000494945	DDX19B	Q9UMR2	479 aa		14.01	□□□□□ -0.17
PKP4-215	ENST00000494945	TMEM57	Q8N5G2	664 aa		14	□□□□□ -0.17
PKP4-215	ENST00000494945	ACSBG1	Q96GR2	724 aa		14	□□□□□ -0.17
PKP4-215	ENST00000494945	CHMP4B	Q9H444	224 aa	Known RBP	14	□□□□□ -0.17
PKP4-215	ENST00000494945	PTCD1	O75127	700 aa	Known RBP	13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	FKBP5	Q13451	457 aa	Predicted RBP	13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	INTS3	Q68E01	1043 aa	Known RBP	13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	ITPRIP	Q8IWB1	547 aa		13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	SMARCC1	Q92922	1105 aa	Predicted RBP	13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	USP16	Q9Y5T5	823 aa		13.99	□□□□□ -0.17
PKP4-215	ENST00000494945	PDIA6	Q15084	440 aa		13.98	□□□□□ -0.17
PKP4-215	ENST00000494945	CCDC136	Q96JN2	1154 aa		13.98	□□□□□ -0.17
PKP4-215	ENST00000494945	PHAX	Q9H814	394 aa	Known RBP	13.98	□□□□□ -0.17
PKP4-215	ENST00000494945	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.97	□□□□□ -0.17
PKP4-215	ENST00000494945	RGPD4	Q7Z3J3	1758 aa		13.97	□□□□□ -0.17
PKP4-215	ENST00000494945	CCT4	P50991	539 aa	Known RBP	13.97	□□□□□ -0.17
PKP4-215	ENST00000494945	PROSER3	Q2NL68	480 aa		13.97	□□□□□ -0.17
PKP4-215	ENST00000494945	RBM42	Q9BTD8	480 aa	Known RBP	13.97	□□□□□ -0.17
PKP4-215	ENST00000494945	PALLD	Q8WX93	1383 aa		13.96	□□□□□ -0.17
PKP4-215	ENST00000494945	BCOR	Q6W2J9	1755 aa		13.96	□□□□□ -0.17
PKP4-215	ENST00000494945	TNS1	Q9HBL0	1735 aa	Known RBP	13.96	□□□□□ -0.17
PKP4-215	ENST00000494945	STARD3NL	O95772	234 aa		13.96	□□□□□ -0.17
PKP4-215	ENST00000494945	B4GALNT3	Q6L9W6	998 aa		13.96	□□□□□ -0.17
PKP4-215	ENST00000494945	ATP10D	Q9P241	1426 aa		13.96	□□□□□ -0.18
PKP4-215	ENST00000494945	KCNQ2	O43526	872 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	DDX58	O95786	925 aa	Known RBP	13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	ANXA1	P04083	346 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	RXRB	P28702	533 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	KRT27	Q7Z3Y8	459 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	DNAJC10	Q8IXB1	793 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	ADCY9	O60503	1353 aa		13.95	□□□□□ -0.18
PKP4-215	ENST00000494945	MYH3	P11055	1940 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945		F6X3S4	739 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945	KSR2	Q6VAB6	950 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945	FAM196A	Q6ZSG2	479 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945	LRP10	Q7Z4F1	713 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945	ZBTB40	Q9NUA8	1239 aa		13.94	□□□□□ -0.18
PKP4-215	ENST00000494945	LOC102724428	A0A0B4J2F2	783 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	NBPF26	B4DH59	902 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	ZBTB7B	O15156	539 aa	Predicted RBP	13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	MYL6B	P14649	208 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	SIK1	P57059	783 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	NBPF14	Q5TI25	921 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	NBPF10	Q6P3W6	841 aa	Known RBP	13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	SLC4A10	Q6U841	1118 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	NBPF15	Q8N660	670 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	DNAAF4	Q8WXU2	420 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	SLC4A9	Q96Q91	983 aa		13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.93	□□□□□ -0.18
PKP4-215	ENST00000494945	PI4KAP2	A4QPH2	592 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	A1BG	P04217	495 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	CYP19A1	P11511	503 aa	Predicted RBP	13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	FAM182B	Q5T319	152 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	PI4KAP1	Q8N8J0	262 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	XAGE3	Q8WTP9	111 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	RGS17	Q9UGC6	210 aa	Predicted RBP	13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	UBR3	Q6ZT12	1888 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	C4B	P0C0L5	1744 aa		13.92	□□□□□ -0.18
PKP4-215	ENST00000494945	C4A	P0C0L4	1744 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	ATP6V1A	P38606	617 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	COPS6	Q7L5N1	327 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	MAP3K2	Q9Y2U5	619 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	SCN7A	Q01118	1682 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	CASZ1	Q86V15	1759 aa		13.91	□□□□□ -0.18
PKP4-215	ENST00000494945	AIMP1	Q12904	312 aa	Known RBP	13.9	□□□□□ -0.18
PKP4-215	ENST00000494945	ANKRD13D	Q6ZTN6	518 aa		13.9	□□□□□ -0.18
PKP4-215	ENST00000494945	SRCIN1	Q9C0H9	1055 aa		13.9	□□□□□ -0.18
PKP4-215	ENST00000494945	ALDH1L1	O75891	902 aa		13.89	□□□□□ -0.19
PKP4-215	ENST00000494945	PIP4K2A	P48426	406 aa	Predicted RBP	13.89	□□□□□ -0.19
PKP4-215	ENST00000494945	BEND3	Q5T5X7	828 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms