RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 UBR2Q8IWV8 1755 aa20.92■□□□□ 0.94
LIME1-209ENST00000494776 KLHL34Q8N239 644 aa20.91■□□□□ 0.94
LIME1-209ENST00000494776 CICQ96RK0 1608 aaPredicted RBP20.91■□□□□ 0.94
LIME1-209ENST00000494776 APAF1O14727 1248 aa20.9■□□□□ 0.94
LIME1-209ENST00000494776 SNRPA1P09661 255 aaKnown RBP20.9■□□□□ 0.94
LIME1-209ENST00000494776 CANXP27824 592 aaKnown RBP20.9■□□□□ 0.94
LIME1-209ENST00000494776 ZBTB1Q9Y2K1 713 aa20.89■□□□□ 0.93
LIME1-209ENST00000494776 MYH14Q7Z406 1995 aaKnown RBP20.88■□□□□ 0.93
LIME1-209ENST00000494776 NPM2Q86SE8 214 aaKnown RBP20.88■□□□□ 0.93
LIME1-209ENST00000494776 FHDC1Q9C0D6 1143 aaPredicted RBP20.88■□□□□ 0.93
LIME1-209ENST00000494776 TSPYL4Q9UJ04 414 aa20.88■□□□□ 0.93
LIME1-209ENST00000494776 SOS1Q07889 1333 aaPredicted RBP20.87■□□□□ 0.93
LIME1-209ENST00000494776 TRIM35Q9UPQ4 493 aa20.87■□□□□ 0.93
LIME1-209ENST00000494776 LAS1LQ9Y4W2 734 aaKnown RBP20.87■□□□□ 0.93
LIME1-209ENST00000494776 ZPR1O75312 459 aa20.86■□□□□ 0.93
LIME1-209ENST00000494776 NLGN1Q8N2Q7 840 aa20.86■□□□□ 0.93
LIME1-209ENST00000494776 ZNF330Q9Y3S2 320 aaPredicted RBP20.86■□□□□ 0.93
LIME1-209ENST00000494776 USP16Q9Y5T5 823 aa20.86■□□□□ 0.93
LIME1-209ENST00000494776 PRAMEF22A3QJZ6 481 aa20.85■□□□□ 0.93
LIME1-209ENST00000494776 A1BGP04217 495 aa20.85■□□□□ 0.93
LIME1-209ENST00000494776 EIF4A1P60842 406 aaKnown RBP20.84■□□□□ 0.93
LIME1-209ENST00000494776 SYT17Q9BSW7 474 aa20.84■□□□□ 0.93
LIME1-209ENST00000494776 BABAM1Q9NWV8 329 aa20.84■□□□□ 0.93
LIME1-209ENST00000494776 SRP68Q9UHB9 627 aaKnown RBP20.84■□□□□ 0.93
LIME1-209ENST00000494776 COL15A1P39059 1388 aa20.84■□□□□ 0.93
LIME1-209ENST00000494776 A0A087WZG4 1122 aa20.83■□□□□ 0.93
LIME1-209ENST00000494776 GYS1P13807 737 aa20.83■□□□□ 0.93
LIME1-209ENST00000494776 USP42Q9H9J4 1324 aaKnown RBP20.82■□□□□ 0.92
LIME1-209ENST00000494776 COL24A1Q17RW2 1714 aa20.82■□□□□ 0.92
LIME1-209ENST00000494776 MMP10P09238 476 aa20.82■□□□□ 0.92
LIME1-209ENST00000494776 FAM9BQ8IZU0 186 aa20.82■□□□□ 0.92
LIME1-209ENST00000494776 GIGYF1O75420 1035 aaPredicted RBP20.81■□□□□ 0.92
LIME1-209ENST00000494776 IL6STP40189 918 aaPredicted RBP20.81■□□□□ 0.92
LIME1-209ENST00000494776 EIF5P55010 431 aaKnown RBP20.81■□□□□ 0.92
LIME1-209ENST00000494776 CALD1Q05682 793 aaKnown RBP20.81■□□□□ 0.92
LIME1-209ENST00000494776 USPL1Q5W0Q7 1092 aa20.81■□□□□ 0.92
LIME1-209ENST00000494776 KDM3BQ7LBC6 1761 aa20.81■□□□□ 0.92
LIME1-209ENST00000494776 SENP3-EIF4A1A0A087X0R7 540 aa20.8■□□□□ 0.92
LIME1-209ENST00000494776 PIP4K2AP48426 406 aaPredicted RBP20.8■□□□□ 0.92
LIME1-209ENST00000494776 NARFQ9UHQ1 456 aa20.8■□□□□ 0.92
LIME1-209ENST00000494776 PARP3Q9Y6F1 533 aa20.8■□□□□ 0.92
LIME1-209ENST00000494776 C4AP0C0L4 1744 aa20.8■□□□□ 0.92
LIME1-209ENST00000494776 FKBP8Q14318 412 aa20.79■□□□□ 0.92
LIME1-209ENST00000494776 CHL1O00533 1208 aa20.78■□□□□ 0.92
LIME1-209ENST00000494776 CFAP44Q96MT7 982 aa20.77■□□□□ 0.92
LIME1-209ENST00000494776 TBC1D2BQ9UPU7 963 aa20.77■□□□□ 0.92
LIME1-209ENST00000494776 CD2APQ9Y5K6 639 aa20.76■□□□□ 0.91
LIME1-209ENST00000494776 EIF2S2P20042 333 aaKnown RBP20.75■□□□□ 0.91
LIME1-209ENST00000494776 GNAI1P63096 354 aa20.75■□□□□ 0.91
LIME1-209ENST00000494776 DZIP3Q86Y13 1208 aaKnown RBP20.75■□□□□ 0.91
LIME1-209ENST00000494776 NLGN2Q8NFZ4 835 aa20.74■□□□□ 0.91
LIME1-209ENST00000494776 IFT57Q9NWB7 429 aa20.74■□□□□ 0.91
LIME1-209ENST00000494776 SALL2Q9Y467 1007 aaPredicted RBP20.74■□□□□ 0.91
LIME1-209ENST00000494776 NBPF26B4DH59 902 aa20.73■□□□□ 0.91
LIME1-209ENST00000494776 YY1P25490 414 aa20.73■□□□□ 0.91
LIME1-209ENST00000494776 NBPF10Q6P3W6 841 aaKnown RBP20.73■□□□□ 0.91
LIME1-209ENST00000494776 NGEFQ8N5V2 710 aa20.73■□□□□ 0.91
LIME1-209ENST00000494776 NBPF15Q8N660 670 aa20.73■□□□□ 0.91
LIME1-209ENST00000494776 MYL6BP14649 208 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 CCDC27Q2M243 656 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 DIEXFQ68CQ4 756 aaKnown RBP20.72■□□□□ 0.91
LIME1-209ENST00000494776 BICDL1Q6ZP65 573 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 PELP1Q8IZL8 1130 aaKnown RBP20.72■□□□□ 0.91
LIME1-209ENST00000494776 BCL2L12Q9HB09 334 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 MBIPQ9NS73 344 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 LAMB4A4D0S4 1761 aa20.72■□□□□ 0.91
LIME1-209ENST00000494776 TM4SF1P30408 202 aa20.71■□□□□ 0.91
LIME1-209ENST00000494776 NFIXQ14938 502 aa20.71■□□□□ 0.91
LIME1-209ENST00000494776 WWC1Q8IX03 1113 aa20.71■□□□□ 0.91
LIME1-209ENST00000494776 NECTIN2Q92692 538 aa20.71■□□□□ 0.91
LIME1-209ENST00000494776 CAMTA2O94983 1202 aa20.7■□□□□ 0.9
LIME1-209ENST00000494776 ZNF853P0CG23 659 aa20.7■□□□□ 0.9
LIME1-209ENST00000494776 DDR1Q08345 913 aa20.7■□□□□ 0.9
LIME1-209ENST00000494776 GPR162Q16538 588 aa20.7■□□□□ 0.9
LIME1-209ENST00000494776 KRT24Q2M2I5 525 aa20.7■□□□□ 0.9
LIME1-209ENST00000494776 POLRMTO00411 1230 aaKnown RBP20.69■□□□□ 0.9
LIME1-209ENST00000494776 NCBP3Q53F19 620 aaKnown RBP20.69■□□□□ 0.9
LIME1-209ENST00000494776 ZNF652Q9Y2D9 606 aa20.69■□□□□ 0.9
LIME1-209ENST00000494776 ERBB4Q15303 1308 aa20.69■□□□□ 0.9
LIME1-209ENST00000494776 CCER2I3L3R5 266 aa20.68■□□□□ 0.9
LIME1-209ENST00000494776 TBC1D9BQ66K14 1250 aa20.68■□□□□ 0.9
LIME1-209ENST00000494776 SERPINB2P05120 415 aa20.67■□□□□ 0.9
LIME1-209ENST00000494776 DUSP27Q5VZP5 1158 aa20.67■□□□□ 0.9
LIME1-209ENST00000494776 KIF6Q6ZMV9 814 aa20.67■□□□□ 0.9
LIME1-209ENST00000494776 SETDB2Q96T68 719 aa20.67■□□□□ 0.9
LIME1-209ENST00000494776 NPHP1O15259 732 aa20.66■□□□□ 0.9
LIME1-209ENST00000494776 HOXB7P09629 217 aa20.66■□□□□ 0.9
LIME1-209ENST00000494776 HDGFL1Q5TGJ6 251 aa20.66■□□□□ 0.9
LIME1-209ENST00000494776 CLEC4GQ6UXB4 293 aa20.66■□□□□ 0.9
LIME1-209ENST00000494776 TGFB2P61812 414 aa20.65■□□□□ 0.9
LIME1-209ENST00000494776 SCN7AQ01118 1682 aa20.64■□□□□ 0.9
LIME1-209ENST00000494776 C10orf71Q711Q0 1435 aa20.64■□□□□ 0.89
LIME1-209ENST00000494776 ELL2O00472 640 aaPredicted RBP20.64■□□□□ 0.89
LIME1-209ENST00000494776 CARMIL3Q8ND23 1372 aa20.63■□□□□ 0.89
LIME1-209ENST00000494776 IL16Q14005 1332 aa20.63■□□□□ 0.89
LIME1-209ENST00000494776 ANXA1P04083 346 aa20.63■□□□□ 0.89
LIME1-209ENST00000494776 TTLL7Q6ZT98 887 aa20.63■□□□□ 0.89
LIME1-209ENST00000494776 WDR63Q8IWG1 891 aa20.63■□□□□ 0.89
LIME1-209ENST00000494776 TSR2Q969E8 191 aaKnown RBP20.63■□□□□ 0.89
LIME1-209ENST00000494776 WWC3Q9ULE0 1092 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms