RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 PIP4K2AP48426 406 aaPredicted RBP23.22■■□□□ 1.31
PDLIM7-208ENST00000493815 STARD3NLO95772 234 aa23.21■■□□□ 1.31
PDLIM7-208ENST00000493815 A1BGP04217 495 aa23.21■■□□□ 1.31
PDLIM7-208ENST00000493815 INTS5Q6P9B9 1019 aaKnown RBP23.21■■□□□ 1.31
PDLIM7-208ENST00000493815 C8orf58Q8NAV2 365 aa23.21■■□□□ 1.31
PDLIM7-208ENST00000493815 COL5A3P25940 1745 aaPredicted RBP23.2■■□□□ 1.3
PDLIM7-208ENST00000493815 PHF14O94880 888 aa23.2■■□□□ 1.3
PDLIM7-208ENST00000493815 TEX13AQ9BXU3 409 aaPredicted RBP23.2■■□□□ 1.3
PDLIM7-208ENST00000493815 CNTNAP4Q9C0A0 1308 aa23.2■■□□□ 1.3
PDLIM7-208ENST00000493815 EIF2S2P20042 333 aaKnown RBP23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 TSPYL6Q8N831 410 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 NECTIN2Q92692 538 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 PDGFDQ9GZP0 370 aaPredicted RBP23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 CCDC87Q9NVE4 849 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 ZBTB1Q9Y2K1 713 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 CANXP27824 592 aaKnown RBP23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 DUSP27Q5VZP5 1158 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 YTHDC1Q96MU7 727 aaKnown RBP23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 MYH16Q9H6N6 1097 aa23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 CICQ96RK0 1608 aaPredicted RBP23.19■■□□□ 1.3
PDLIM7-208ENST00000493815 RC3H1Q5TC82 1133 aaKnown RBP23.18■■□□□ 1.3
PDLIM7-208ENST00000493815 MYH14Q7Z406 1995 aaKnown RBP23.17■■□□□ 1.3
PDLIM7-208ENST00000493815 SLFN5Q08AF3 891 aa23.17■■□□□ 1.3
PDLIM7-208ENST00000493815 E9PSI1 815 aa23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 EXOSC9Q06265 439 aaKnown RBP23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 PNPLA7Q6ZV29 1317 aa23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 RTCBQ9Y3I0 505 aaKnown RBP23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 ZNF330Q9Y3S2 320 aaPredicted RBP23.16■■□□□ 1.3
PDLIM7-208ENST00000493815 HMGB2P26583 209 aaKnown RBP23.15■■□□□ 1.3
PDLIM7-208ENST00000493815 ZBED9Q6R2W3 1325 aa23.15■■□□□ 1.3
PDLIM7-208ENST00000493815 NBPF26B4DH59 902 aa23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 MSH5O43196 834 aa23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 RPS6KA4O75676 772 aa23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 NBPF10Q6P3W6 841 aaKnown RBP23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 COL23A1Q86Y22 540 aaPredicted RBP23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 NBPF15Q8N660 670 aa23.14■■□□□ 1.29
PDLIM7-208ENST00000493815 TUBGCP6Q96RT7 1819 aa23.13■■□□□ 1.29
PDLIM7-208ENST00000493815 TWISTNBQ3B726 338 aaPredicted RBP23.13■■□□□ 1.29
PDLIM7-208ENST00000493815 HDGFL1Q5TGJ6 251 aa23.13■■□□□ 1.29
PDLIM7-208ENST00000493815 ANXA1P04083 346 aa23.12■■□□□ 1.29
PDLIM7-208ENST00000493815 SOS1Q07889 1333 aaPredicted RBP23.12■■□□□ 1.29
PDLIM7-208ENST00000493815 UBR3Q6ZT12 1888 aa23.12■■□□□ 1.29
PDLIM7-208ENST00000493815 MYL6BP14649 208 aa23.11■■□□□ 1.29
PDLIM7-208ENST00000493815 SSFA2P28290 1259 aa23.11■■□□□ 1.29
PDLIM7-208ENST00000493815 PROSER3Q2NL68 480 aa23.11■■□□□ 1.29
PDLIM7-208ENST00000493815 ARHGEF1Q92888 912 aaKnown RBP23.11■■□□□ 1.29
PDLIM7-208ENST00000493815 LAMB4A4D0S4 1761 aa23.11■■□□□ 1.29
PDLIM7-208ENST00000493815 TCERG1O14776 1098 aaKnown RBP23.1■■□□□ 1.29
PDLIM7-208ENST00000493815 HOXB7P09629 217 aa23.1■■□□□ 1.29
PDLIM7-208ENST00000493815 TRAPPC3LQ5T215 181 aa23.1■■□□□ 1.29
PDLIM7-208ENST00000493815 TRMT2AQ8IZ69 625 aaKnown RBP23.1■■□□□ 1.29
PDLIM7-208ENST00000493815 EIF5P55010 431 aaKnown RBP23.09■■□□□ 1.29
PDLIM7-208ENST00000493815 PDIA6Q15084 440 aa23.09■■□□□ 1.29
PDLIM7-208ENST00000493815 ARXQ96QS3 562 aa23.09■■□□□ 1.29
PDLIM7-208ENST00000493815 CHPF2Q9P2E5 772 aa23.09■■□□□ 1.29
PDLIM7-208ENST00000493815 SRCAPQ6ZRS2 3230 aa23.08■■□□□ 1.29
PDLIM7-208ENST00000493815 COL15A1P39059 1388 aa23.07■■□□□ 1.28
PDLIM7-208ENST00000493815 VAMP4O75379 141 aa23.07■■□□□ 1.28
PDLIM7-208ENST00000493815 IL6STP40189 918 aaPredicted RBP23.07■■□□□ 1.28
PDLIM7-208ENST00000493815 SRP68Q9UHB9 627 aaKnown RBP23.07■■□□□ 1.28
PDLIM7-208ENST00000493815 ZBTB7AO95365 584 aa23.06■■□□□ 1.28
PDLIM7-208ENST00000493815 RFC4P35249 363 aa23.06■■□□□ 1.28
PDLIM7-208ENST00000493815 FLAD1Q8NFF5 587 aa23.06■■□□□ 1.28
PDLIM7-208ENST00000493815 ADRA2BP18089 450 aa23.06■■□□□ 1.28
PDLIM7-208ENST00000493815 TBC1D2BQ9UPU7 963 aa23.06■■□□□ 1.28
PDLIM7-208ENST00000493815 MSL1Q68DK7 614 aa23.05■■□□□ 1.28
PDLIM7-208ENST00000493815 NPM2Q86SE8 214 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-208ENST00000493815 CCDC30Q5VVM6 783 aa23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 LRP10Q7Z4F1 713 aa23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 DDX21Q9NR30 783 aaKnown RBP eCLIP23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 ERBB4Q15303 1308 aa23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 QSER1Q2KHR3 1735 aa23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 DBF4Q9UBU7 674 aaPredicted RBP23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 ATF5Q9Y2D1 282 aaPredicted RBP23.03■■□□□ 1.28
PDLIM7-208ENST00000493815 CASZ1Q86V15 1759 aa23.02■■□□□ 1.28
PDLIM7-208ENST00000493815 USPL1Q5W0Q7 1092 aa23.02■■□□□ 1.28
PDLIM7-208ENST00000493815 TTLL7Q6ZT98 887 aa23.02■■□□□ 1.28
PDLIM7-208ENST00000493815 DZIP3Q86Y13 1208 aaKnown RBP23.02■■□□□ 1.28
PDLIM7-208ENST00000493815 USP42Q9H9J4 1324 aaKnown RBP23.01■■□□□ 1.27
PDLIM7-208ENST00000493815 ZPR1O75312 459 aa23.01■■□□□ 1.27
PDLIM7-208ENST00000493815 AIMP1Q12904 312 aaKnown RBP23.01■■□□□ 1.27
PDLIM7-208ENST00000493815 C4AP0C0L4 1744 aa23.01■■□□□ 1.27
PDLIM7-208ENST00000493815 A0A087WZG4 1122 aa23■■□□□ 1.27
PDLIM7-208ENST00000493815 COPS6Q7L5N1 327 aa23■■□□□ 1.27
PDLIM7-208ENST00000493815 XAGE3Q8WTP9 111 aa23■■□□□ 1.27
PDLIM7-208ENST00000493815 PHAXQ9H814 394 aaKnown RBP23■■□□□ 1.27
PDLIM7-208ENST00000493815 NARFQ9UHQ1 456 aa23■■□□□ 1.27
PDLIM7-208ENST00000493815 SLC4A2P04920 1241 aa22.99■■□□□ 1.27
PDLIM7-208ENST00000493815 GYS1P13807 737 aa22.99■■□□□ 1.27
PDLIM7-208ENST00000493815 STK31Q9BXU1 1019 aa22.99■■□□□ 1.27
PDLIM7-208ENST00000493815 CAMTA2O94983 1202 aa22.98■■□□□ 1.27
PDLIM7-208ENST00000493815 FKBP8Q14318 412 aa22.98■■□□□ 1.27
PDLIM7-208ENST00000493815 BCL2L12Q9HB09 334 aa22.98■■□□□ 1.27
PDLIM7-208ENST00000493815 SLC16A10Q8TF71 515 aa22.97■■□□□ 1.27
PDLIM7-208ENST00000493815 MTFR1LQ9H019 292 aa22.97■■□□□ 1.27
PDLIM7-208ENST00000493815 ZBTB3Q9H5J0 574 aa22.97■■□□□ 1.27
PDLIM7-208ENST00000493815 HYPKQ9NX55 129 aa22.97■■□□□ 1.27
PDLIM7-208ENST00000493815 G2E3Q7L622 706 aa22.97■■□□□ 1.27
PDLIM7-208ENST00000493815 BCL2L13Q9BXK5 485 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms