RNA–Protein interactions for RNA: ENST00000490387.1

RAPGEF3-212, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 699 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-212ENST00000490387 TRAPPC3LQ5T215 181 aa22.34■■□□□ 1.17
RAPGEF3-212ENST00000490387 TJP1Q07157 1748 aa22.34■■□□□ 1.17
RAPGEF3-212ENST00000490387 CICQ96RK0 1608 aaPredicted RBP22.33■■□□□ 1.17
RAPGEF3-212ENST00000490387 CD2APQ9Y5K6 639 aa22.33■■□□□ 1.17
RAPGEF3-212ENST00000490387 ADRA2BP18089 450 aa22.32■■□□□ 1.16
RAPGEF3-212ENST00000490387 C4AP0C0L4 1744 aa22.31■■□□□ 1.16
RAPGEF3-212ENST00000490387 RPS6KA4O75676 772 aa22.3■■□□□ 1.16
RAPGEF3-212ENST00000490387 TAF7Q15545 349 aaPredicted RBP22.3■■□□□ 1.16
RAPGEF3-212ENST00000490387 SALL2Q9Y467 1007 aaPredicted RBP22.3■■□□□ 1.16
RAPGEF3-212ENST00000490387 KCPQ6ZWJ8 1503 aa22.3■■□□□ 1.16
RAPGEF3-212ENST00000490387 ZNF853P0CG23 659 aa22.29■■□□□ 1.16
RAPGEF3-212ENST00000490387 RFC4P35249 363 aa22.29■■□□□ 1.16
RAPGEF3-212ENST00000490387 CRKLP46109 303 aaKnown RBP22.29■■□□□ 1.16
RAPGEF3-212ENST00000490387 ARHGEF1Q92888 912 aaKnown RBP22.29■■□□□ 1.16
RAPGEF3-212ENST00000490387 SLC39A6Q13433 755 aa22.28■■□□□ 1.16
RAPGEF3-212ENST00000490387 BABAM1Q9NWV8 329 aa22.28■■□□□ 1.16
RAPGEF3-212ENST00000490387 IL16Q14005 1332 aa22.28■■□□□ 1.16
RAPGEF3-212ENST00000490387 BTBD11A6QL63 1104 aa22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 CHL1O00533 1208 aa22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 MMP10P09238 476 aa22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 CALD1Q05682 793 aaKnown RBP22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 WDR63Q8IWG1 891 aa22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 GOLGB1Q14789 3259 aaKnown RBP22.27■■□□□ 1.16
RAPGEF3-212ENST00000490387 HNRNPUQ00839 825 aaKnown RBP eCLIP22.26■■□□□ 1.15
RAPGEF3-212ENST00000490387 ZNF790Q6PG37 636 aa22.26■■□□□ 1.15
RAPGEF3-212ENST00000490387 NLGN1Q8N2Q7 840 aa22.26■■□□□ 1.15
RAPGEF3-212ENST00000490387 CFAP44Q96MT7 982 aa22.26■■□□□ 1.15
RAPGEF3-212ENST00000490387 IFT57Q9NWB7 429 aa22.26■■□□□ 1.15
RAPGEF3-212ENST00000490387 KCNQ3O43525 872 aa22.25■■□□□ 1.15
RAPGEF3-212ENST00000490387 GRIN3BO60391 1043 aa22.25■■□□□ 1.15
RAPGEF3-212ENST00000490387 YBX3P16989 372 aaKnown RBP eCLIP22.25■■□□□ 1.15
RAPGEF3-212ENST00000490387 DNAJC10Q8IXB1 793 aa22.25■■□□□ 1.15
RAPGEF3-212ENST00000490387 MIS18AQ9NYP9 233 aa22.25■■□□□ 1.15
RAPGEF3-212ENST00000490387 GYS1P13807 737 aa22.24■■□□□ 1.15
RAPGEF3-212ENST00000490387 TTC5Q8N0Z6 440 aa22.23■■□□□ 1.15
RAPGEF3-212ENST00000490387 KIF13BQ9NQT8 1826 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 GNAI1P63096 354 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 INTS5Q6P9B9 1019 aaKnown RBP22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 ZNF784Q8NCA9 323 aaPredicted RBP22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 SPINK5Q9NQ38 1064 aaPredicted RBP22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 CCDC87Q9NVE4 849 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 TSPYL4Q9UJ04 414 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 ZBED9Q6R2W3 1325 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 HEG1Q9ULI3 1381 aa22.22■■□□□ 1.15
RAPGEF3-212ENST00000490387 ZNF496Q96IT1 587 aaPredicted RBP22.21■■□□□ 1.15
RAPGEF3-212ENST00000490387 MBIPQ9NS73 344 aa22.21■■□□□ 1.15
RAPGEF3-212ENST00000490387 CYP19A1P11511 503 aaPredicted RBP22.2■■□□□ 1.14
RAPGEF3-212ENST00000490387 USP42Q9H9J4 1324 aaKnown RBP22.2■■□□□ 1.14
RAPGEF3-212ENST00000490387 EIF4A1P60842 406 aaKnown RBP22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 VSIG10Q8N0Z9 540 aa22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 SRP68Q9UHB9 627 aaKnown RBP22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 WWC3Q9ULE0 1092 aa22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 LAS1LQ9Y4W2 734 aaKnown RBP22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 PARP3Q9Y6F1 533 aa22.19■■□□□ 1.14
RAPGEF3-212ENST00000490387 GOLGA2Q08379 1002 aa22.18■■□□□ 1.14
RAPGEF3-212ENST00000490387 N4BP2Q86UW6 1770 aaPredicted RBP22.17■■□□□ 1.14
RAPGEF3-212ENST00000490387 C10orf71Q711Q0 1435 aa22.17■■□□□ 1.14
RAPGEF3-212ENST00000490387 SOS1Q07889 1333 aaPredicted RBP22.17■■□□□ 1.14
RAPGEF3-212ENST00000490387 FMNL2Q96PY5 1086 aa22.17■■□□□ 1.14
RAPGEF3-212ENST00000490387 LAMB4A4D0S4 1761 aa22.17■■□□□ 1.14
RAPGEF3-212ENST00000490387 FANCIQ9NVI1 1328 aa22.16■■□□□ 1.14
RAPGEF3-212ENST00000490387 ZPR1O75312 459 aa22.16■■□□□ 1.14
RAPGEF3-212ENST00000490387 TSR2Q969E8 191 aaKnown RBP22.16■■□□□ 1.14
RAPGEF3-212ENST00000490387 ZBTB1Q9Y2K1 713 aa22.16■■□□□ 1.14
RAPGEF3-212ENST00000490387 PXDNLA1KZ92 1463 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 COL15A1P39059 1388 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 KIAA1551Q9HCM1 1747 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 SLFN5Q08AF3 891 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 FKBP8Q14318 412 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 TRMT2AQ8IZ69 625 aaKnown RBP22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 CDCA7LQ96GN5 454 aa22.15■■□□□ 1.14
RAPGEF3-212ENST00000490387 E9PSI1 815 aa22.14■■□□□ 1.13
RAPGEF3-212ENST00000490387 STARD3NLO95772 234 aa22.14■■□□□ 1.13
RAPGEF3-212ENST00000490387 GIGYF1O75420 1035 aaPredicted RBP22.13■■□□□ 1.13
RAPGEF3-212ENST00000490387 TGFB2P61812 414 aa22.13■■□□□ 1.13
RAPGEF3-212ENST00000490387 USPL1Q5W0Q7 1092 aa22.13■■□□□ 1.13
RAPGEF3-212ENST00000490387 MYH16Q9H6N6 1097 aa22.13■■□□□ 1.13
RAPGEF3-212ENST00000490387 CANXP27824 592 aaKnown RBP22.12■■□□□ 1.13
RAPGEF3-212ENST00000490387 KRT24Q2M2I5 525 aa22.12■■□□□ 1.13
RAPGEF3-212ENST00000490387 PRAMEF22A3QJZ6 481 aa22.11■■□□□ 1.13
RAPGEF3-212ENST00000490387 SNRPA1P09661 255 aaKnown RBP22.11■■□□□ 1.13
RAPGEF3-212ENST00000490387 TEX13AQ9BXU3 409 aaPredicted RBP22.11■■□□□ 1.13
RAPGEF3-212ENST00000490387 A0A0G2JLW4 131 aa22.1■■□□□ 1.13
RAPGEF3-212ENST00000490387 DDR1Q08345 913 aa22.1■■□□□ 1.13
RAPGEF3-212ENST00000490387 NARFQ9UHQ1 456 aa22.1■■□□□ 1.13
RAPGEF3-212ENST00000490387 BRCA1P38398 1863 aaKnown RBP22.09■■□□□ 1.13
RAPGEF3-212ENST00000490387 DUSP27Q5VZP5 1158 aa22.09■■□□□ 1.13
RAPGEF3-212ENST00000490387 C8orf58Q8NAV2 365 aa22.09■■□□□ 1.13
RAPGEF3-212ENST00000490387 HOXB7P09629 217 aa22.08■■□□□ 1.13
RAPGEF3-212ENST00000490387 POLRMTO00411 1230 aaKnown RBP22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 DPEP1P16444 411 aa22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 TM4SF1P30408 202 aa22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 TSPYL6Q8N831 410 aa22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 BCS1LQ9Y276 419 aa22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 USP16Q9Y5T5 823 aa22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 AFDNP55196 1824 aaKnown RBP22.07■■□□□ 1.12
RAPGEF3-212ENST00000490387 A0A087WZG4 1122 aa22.06■■□□□ 1.12
RAPGEF3-212ENST00000490387 YTHDC1Q96MU7 727 aaKnown RBP22.06■■□□□ 1.12
RAPGEF3-212ENST00000490387 ZNF330Q9Y3S2 320 aaPredicted RBP22.06■■□□□ 1.12
RAPGEF3-212ENST00000490387 EIF5P55010 431 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms