RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 SYT17Q9BSW7 474 aa17.62■□□□□ 0.41
CCL28-202ENST00000489442 TMPOP42166 694 aaKnown RBP17.61■□□□□ 0.41
CCL28-202ENST00000489442 LMOD3Q0VAK6 560 aa17.61■□□□□ 0.41
CCL28-202ENST00000489442 PNISRQ8TF01 805 aaKnown RBP17.61■□□□□ 0.41
CCL28-202ENST00000489442 CANXP27824 592 aaKnown RBP17.6■□□□□ 0.41
CCL28-202ENST00000489442 NLGN1Q8N2Q7 840 aa17.6■□□□□ 0.41
CCL28-202ENST00000489442 THUMPD2Q9BTF0 503 aaKnown RBP17.6■□□□□ 0.41
CCL28-202ENST00000489442 MIS18AQ9NYP9 233 aa17.6■□□□□ 0.41
CCL28-202ENST00000489442 RRP7AQ9Y3A4 280 aaKnown RBP17.6■□□□□ 0.41
CCL28-202ENST00000489442 ZPR1O75312 459 aa17.59■□□□□ 0.41
CCL28-202ENST00000489442 NPM2Q86SE8 214 aaKnown RBP17.59■□□□□ 0.41
CCL28-202ENST00000489442 ZBTB1Q9Y2K1 713 aa17.59■□□□□ 0.41
CCL28-202ENST00000489442 C4AP0C0L4 1744 aa17.58■□□□□ 0.41
CCL28-202ENST00000489442 SNRPA1P09661 255 aaKnown RBP17.57■□□□□ 0.4
CCL28-202ENST00000489442 ZNF330Q9Y3S2 320 aaPredicted RBP17.57■□□□□ 0.4
CCL28-202ENST00000489442 SOS1Q07889 1333 aaPredicted RBP17.57■□□□□ 0.4
CCL28-202ENST00000489442 MMP10P09238 476 aa17.56■□□□□ 0.4
CCL28-202ENST00000489442 GYS1P13807 737 aa17.56■□□□□ 0.4
CCL28-202ENST00000489442 MRS2Q9HD23 443 aa17.56■□□□□ 0.4
CCL28-202ENST00000489442 SRP68Q9UHB9 627 aaKnown RBP17.56■□□□□ 0.4
CCL28-202ENST00000489442 USP16Q9Y5T5 823 aa17.55■□□□□ 0.4
CCL28-202ENST00000489442 COL15A1P39059 1388 aa17.55■□□□□ 0.4
CCL28-202ENST00000489442 USP42Q9H9J4 1324 aaKnown RBP17.55■□□□□ 0.4
CCL28-202ENST00000489442 A0A087WZG4 1122 aa17.54■□□□□ 0.4
CCL28-202ENST00000489442 A1BGP04217 495 aa17.54■□□□□ 0.4
CCL28-202ENST00000489442 CCDC184Q52MB2 194 aa17.54■□□□□ 0.4
CCL28-202ENST00000489442 TSPYL4Q9UJ04 414 aa17.54■□□□□ 0.4
CCL28-202ENST00000489442 USPL1Q5W0Q7 1092 aa17.53■□□□□ 0.4
CCL28-202ENST00000489442 NARFQ9UHQ1 456 aa17.53■□□□□ 0.4
CCL28-202ENST00000489442 CD2APQ9Y5K6 639 aa17.53■□□□□ 0.4
CCL28-202ENST00000489442 PARP3Q9Y6F1 533 aa17.53■□□□□ 0.4
CCL28-202ENST00000489442 KDM3BQ7LBC6 1761 aa17.53■□□□□ 0.4
CCL28-202ENST00000489442 PRAMEF22A3QJZ6 481 aa17.52■□□□□ 0.4
CCL28-202ENST00000489442 APAF1O14727 1248 aa17.52■□□□□ 0.4
CCL28-202ENST00000489442 IL6STP40189 918 aaPredicted RBP17.52■□□□□ 0.4
CCL28-202ENST00000489442 EIF5P55010 431 aaKnown RBP17.52■□□□□ 0.4
CCL28-202ENST00000489442 PELP1Q8IZL8 1130 aaKnown RBP17.52■□□□□ 0.4
CCL28-202ENST00000489442 LAS1LQ9Y4W2 734 aaKnown RBP17.52■□□□□ 0.4
CCL28-202ENST00000489442 FKBP8Q14318 412 aa17.51■□□□□ 0.39
CCL28-202ENST00000489442 GPR162Q16538 588 aa17.51■□□□□ 0.39
CCL28-202ENST00000489442 NLGN2Q8NFZ4 835 aa17.51■□□□□ 0.39
CCL28-202ENST00000489442 EIF4A1P60842 406 aaKnown RBP17.5■□□□□ 0.39
CCL28-202ENST00000489442 BABAM1Q9NWV8 329 aa17.5■□□□□ 0.39
CCL28-202ENST00000489442 TRIM35Q9UPQ4 493 aa17.5■□□□□ 0.39
CCL28-202ENST00000489442 PIP4K2AP48426 406 aaPredicted RBP17.49■□□□□ 0.39
CCL28-202ENST00000489442 TBC1D2BQ9UPU7 963 aa17.49■□□□□ 0.39
CCL28-202ENST00000489442 GIGYF1O75420 1035 aaPredicted RBP17.48■□□□□ 0.39
CCL28-202ENST00000489442 GOLGB1Q14789 3259 aaKnown RBP17.48■□□□□ 0.39
CCL28-202ENST00000489442 LAMB4A4D0S4 1761 aa17.47■□□□□ 0.39
CCL28-202ENST00000489442 CALD1Q05682 793 aaKnown RBP17.47■□□□□ 0.39
CCL28-202ENST00000489442 DZIP3Q86Y13 1208 aaKnown RBP17.47■□□□□ 0.39
CCL28-202ENST00000489442 UTRNP46939 3433 aa17.46■□□□□ 0.39
CCL28-202ENST00000489442 CHL1O00533 1208 aa17.46■□□□□ 0.38
CCL28-202ENST00000489442 TM4SF1P30408 202 aa17.46■□□□□ 0.38
CCL28-202ENST00000489442 BICDL1Q6ZP65 573 aa17.46■□□□□ 0.38
CCL28-202ENST00000489442 DDR1Q08345 913 aa17.45■□□□□ 0.38
CCL28-202ENST00000489442 NFIXQ14938 502 aa17.45■□□□□ 0.38
CCL28-202ENST00000489442 NGEFQ8N5V2 710 aa17.45■□□□□ 0.38
CCL28-202ENST00000489442 BCL2L12Q9HB09 334 aa17.45■□□□□ 0.38
CCL28-202ENST00000489442 SENP3-EIF4A1A0A087X0R7 540 aa17.44■□□□□ 0.38
CCL28-202ENST00000489442 NBPF26B4DH59 902 aa17.44■□□□□ 0.38
CCL28-202ENST00000489442 POLRMTO00411 1230 aaKnown RBP17.44■□□□□ 0.38
CCL28-202ENST00000489442 EIF2S2P20042 333 aaKnown RBP17.44■□□□□ 0.38
CCL28-202ENST00000489442 NBPF10Q6P3W6 841 aaKnown RBP17.44■□□□□ 0.38
CCL28-202ENST00000489442 FAM9BQ8IZU0 186 aa17.44■□□□□ 0.38
CCL28-202ENST00000489442 NBPF15Q8N660 670 aa17.44■□□□□ 0.38
CCL28-202ENST00000489442 CFAP44Q96MT7 982 aa17.44■□□□□ 0.38
CCL28-202ENST00000489442 KIF13BQ9NQT8 1826 aa17.43■□□□□ 0.38
CCL28-202ENST00000489442 MYL6BP14649 208 aa17.43■□□□□ 0.38
CCL28-202ENST00000489442 TGFB2P61812 414 aa17.43■□□□□ 0.38
CCL28-202ENST00000489442 ZNF652Q9Y2D9 606 aa17.43■□□□□ 0.38
CCL28-202ENST00000489442 CHD4Q14839 1912 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 AFDNP55196 1824 aaKnown RBP17.42■□□□□ 0.38
CCL28-202ENST00000489442 N4BP2Q86UW6 1770 aaPredicted RBP17.42■□□□□ 0.38
CCL28-202ENST00000489442 SCN7AQ01118 1682 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 CAMTA2O94983 1202 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 SERPINB2P05120 415 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 GNAI1P63096 354 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 TBC1D9BQ66K14 1250 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 SETDB2Q96T68 719 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 WWC3Q9ULE0 1092 aa17.42■□□□□ 0.38
CCL28-202ENST00000489442 C10orf71Q711Q0 1435 aa17.41■□□□□ 0.38
CCL28-202ENST00000489442 A0A0G2JLW4 131 aa17.41■□□□□ 0.38
CCL28-202ENST00000489442 NPHP1O15259 732 aa17.41■□□□□ 0.38
CCL28-202ENST00000489442 GRIN3BO60391 1043 aa17.41■□□□□ 0.38
CCL28-202ENST00000489442 ERBB4Q15303 1308 aa17.4■□□□□ 0.38
CCL28-202ENST00000489442 CLEC4GQ6UXB4 293 aa17.4■□□□□ 0.38
CCL28-202ENST00000489442 KIF6Q6ZMV9 814 aa17.4■□□□□ 0.38
CCL28-202ENST00000489442 NECTIN2Q92692 538 aa17.4■□□□□ 0.38
CCL28-202ENST00000489442 IFT57Q9NWB7 429 aa17.4■□□□□ 0.38
CCL28-202ENST00000489442 BCORQ6W2J9 1755 aa17.39■□□□□ 0.37
CCL28-202ENST00000489442 YBX3P16989 372 aaKnown RBP eCLIP17.39■□□□□ 0.37
CCL28-202ENST00000489442 YY1P25490 414 aa17.39■□□□□ 0.37
CCL28-202ENST00000489442 MBIPQ9NS73 344 aa17.39■□□□□ 0.37
CCL28-202ENST00000489442 CARMIL3Q8ND23 1372 aa17.38■□□□□ 0.37
CCL28-202ENST00000489442 DPEP1P16444 411 aa17.38■□□□□ 0.37
CCL28-202ENST00000489442 KRT24Q2M2I5 525 aa17.38■□□□□ 0.37
CCL28-202ENST00000489442 SALL2Q9Y467 1007 aaPredicted RBP17.38■□□□□ 0.37
CCL28-202ENST00000489442 ZNF853P0CG23 659 aa17.37■□□□□ 0.37
CCL28-202ENST00000489442 CCDC27Q2M243 656 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms